Can you add info on which version of tools you are using? about galaxytools HOT 4 CLOSED

Hi @egonw,
in every subdirectoy or Galaxy Tool Shed repository you will find a file called tool_dependencies.xml. Like the following: https://github.com/bgruening/galaxytools/blob/master/chemicaltoolbox/chemfp/tool_dependencies.xml

This file will define a dependency that will be automatically downloaded, compiled if needed and installed. In best case you do not need to worry about dependencies because CTB will try to install them. If you do not want to install dependencies automatically you can omit that option during installation. In that case the tools need to be in your PATH, or similar. Please also keep in mind that every tool in Galaxy and CTB can depend on different versions of, lets say openbabel. All versions will be installed in parallel and made available during tool execution. That enables reproducibility over years.

I can't really point to any other file than tool_dependencies.xml, is that enough to close that ticket?
Thanks Egon!
Bjoern

from galaxytools.

Yeah, pointers to those tool_dependencies.xml in the README will work fine for me!

from galaxytools.

@egonw its fixed in b553d66

Thanks for pointing that out!

from galaxytools.

Thanks!

from galaxytools.