Getting biopython tools into the TS about galaxytools HOT 7 OPEN

• Unless you're test-data then I'd say it's a logical separate for single repositories with perhaps a suite linking them. If they're
• https://github.com/bgruening/galaxytools/blob/master/tools/biopython/codon_count.py#L26 might want to switch to english errors ;)
• Are most of these tools not already part of emboss? I feel like I've seen a translate, a reverse+comp, various GC distribution tools elsewhere?

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@jmchilton we're still hoping to get biopython as a dependency in Galaxy, yes?

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@erasche translate and reverse+comp probably, I need to look it up. But all the converters (which aren't real Galaxy converter, because of multiple inputs) are not included and I need them :)

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For now there are Biopython packages in the Tool Shed which this can point at.

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If would also favour separate TS repositories with suite entry to make getting the whole set easier.

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@erasche absolutely would still like to make biopython available for datatypes. In general though tools should not rely on Galaxy eggs for dependencies - so the tool shed package for biopython is still the way to go here I think.

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@jmchilton ok! (This ping was more for the converters since there are a couple dozen in that directory)

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