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17.0 17.0 3.0 113.86 MB

Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

License: MIT License

Python 100.00%

metaheuristics msa multiple-sequence-alignment optimization python sequence-alignments

sequoya's Introduction

30 second biography

👋 Hello there! My name is Antonio, I am a Software / DevOps Engineer and Researcher.
🏢 Working full-time at the Dept. of Computer Sciences and Languages, University of Málaga in Spain.
⚙️ I have a passionate focus on quality, writing testable code that performs and scales.
✨ I'm also incredibly excited about building infrastructure.
📫 Find me on LinkedIn or drop a mail.

sequoya's People

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dg310012 emohammadi97 tsingke

sequoya's Issues

installation problems

Hi, thanks for putting this package together,

If I make a new venv and pip install seqouya, it gives the following error:

sequoya 0.9.0 depends on dask[complete]==1.2.2
jmetalpy 0.9.0 depends on dask[complete]==1.0.0

Any workaround please?
(Also please mention numpy in the requirenments.)
Best

Package confilects

Whe I try to install Sequoya via pip install Sequoya

I receieve the error information:
The conflict is caused by:
sequoya 0.9.0 depends on dask[complete]==1.2.2
jmetalpy 0.9.0 depends on dask[complete]==1.0.0

To fix this you could try to:

loosen the range of package versions you've specified
remove package versions to allow pip attempt to solve the dependency conflict

Could you help to solve it?

Currently Sequoya is dependent on an older version of PySpark == 2.4.0. This version has severe security vulnerabilities and many organizations have a policy which prevent it from being installed. Can you upgrade the dependency on PySpark?
Thanks!

Error in executing examples

Hi, I am currently having this error when trying to execute nsgaii.py and nsgaii_zdt1.py

AttributeError: 'FigureCanvasTkAgg' object has no attribute 'set_window_title'

Any idea of what can be causing this please ?

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