awaisc / motifoverlapr Goto Github PK
View Code? Open in Web Editor NEWMotif Visualisation and multi-omic integration tool
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motifoverlapr's Issues
Gene Ontology tab additions
Add a few extra options to the gene ontology tab, such as:
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GO IDs for each of the enriched terms
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Links to QuickGO for summary of the term
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Option to either have DE gene filtered, or unfiltered
Additional enhancer annotations
Add additional enhancer information for overlapping rather than just ones that have a gene target (FANTOM5). Also add a heatmap next to the first tab to show which ChromHMM state overlaps each predicted site
Make repository open
No need to make this private. Let. your. code. freeeeeeeee
Gene Ontology tab filtering
Add filtering for
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Pvalue cutoff (slider?)
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Type of Ontology (e.g. MF/BP/CC) - Checkbox would be good
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Min size
Need a snappier name
- TFBSpredict
- PTFvis
- motifOverlapR (I like this one)
- motif prediction tool (MPT)
Pane layout changes
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