The ggplot2 from aphalo

Computing-related Skills

Programing: R, (Python), C++, (Java), C, bash, awk, Perl, sh, (FORTRAN), Modula-2, Pascal, BASIC, Forth.

Text mark up: $\LaTeX$, $\TeX$, Quarto, Rmarkdown, markdown, HTML.

Revision control systems: git, svn, (cvs), rss.

Drafting: Inkscape, OpenSCAD, Adobe Illustrator.

Image/photography: Capture One, Helicon Focus, Lumariver Profile Designer, RawDigger, VueScan, LightRoom, Photoshop.

Video- and interactive tutorials: FlashBack Pro, R shiny.

IDE/GUI’s I like

WinEdt (for $\LaTeX$, $\TeX$, with embedded R code or not), RStudio (for R scripts, Quarto and Rmarkdown), GitKraken (for git).

Elsewhere

ORCID profile: https://orcid.org/0000-0003-3385-972X

Web site for the book Learn R: As a Language.

R Packages

The sources of the R packages I have published are in public Git repositories at GitHub. Out of the packages that I have authored and maintain, 14 are currently available through CRAN. The total number of packages submissions (mostly updates) as author and maintainer is 203 since 2016-01-29.

I have published in CRAN one package update roughly every 15 days, or about 1.97 package updates per month, since 2016-01-29.

The most recent of these updates was published in CRAN on 2024-07-01.

📂 Click to expand a list of my packages at CRAN with the most recently updated one at the top.

R package	Title	Version	Date
ggpp	Grammar Extensions to ‘ggplot2’	0.5.8-1	2024-07-01
ggpmisc	Miscellaneous Extensions to ‘ggplot2’	0.6.0	2024-06-28
gginnards	Explore the Innards of ‘ggplot2’ Objects	0.2.0	2024-05-01
learnrbook	Datasets and Code Examples from P. J. Aphalo’s “Learn R” Book	2.0.1	2024-04-28
photobiologyPlants	Plant Photobiology Related Functions and Data	0.5.0	2024-04-02
photobiologySun	Data for Sunlight Spectra	0.5.0	2024-04-01
photobiology	Photobiological Calculations	0.11.2	2024-03-31
photobiologyFilters	Spectral Transmittance and Spectral Reflectance Data	0.6.0	2024-02-27
photobiologyLEDs	Spectral Data for Light-Emitting-Diodes	0.5.2	2023-11-01
photobiologyLamps	Spectral Irradiance Data for Lamps	0.5.2	2023-10-24
photobiologySensors	Response Data for Light Sensors	0.5.1	2023-10-24
photobiologyWavebands	Waveband Definitions for UV, VIS, and IR Radiation	0.5.2	2023-10-24
ggspectra	Extensions to ‘ggplot2’ for Radiation Spectra	0.3.12	2023-10-21
photobiologyInOut	Read Spectral and Logged Data from Foreign Files	0.4.27	2023-07-20

Updates under development are published at R-Universe as soon as merged or commited into the main branch in the repositories at GitHub. Two packages that depend on a commercial closed-source driver, but usable with a free runtime of the driver, are published only at R-Universe.

R-Universe profile: https://aphalo.r-universe.dev.

Posts and Pages at R for Photobiology

The site R for Photobiology contains 95 posts and pages published since 2016-09-15! I have recently rebuilt the site using Quarto, and I have transferred only some of the posts originally published using WordPress. I am slowly adding more old posts, but only those that remain relevant. The figure below shows original publication date even when posts have been later updated. The source files are in a public repository at GitHub.

I have published one post or page roughly every days, or about 1.0 posts per month, since 2016-09-15.

I published the most recent post 1 days ago.

📂 Click to expand a full list of posts.

Date	Title
2024-07-13	“R Packages: Timeline of Updates”
2024-07-10	“Multichannel LED arrays”
2024-06-11	“Move from Wordpress to Quarto”
2024-06-01	“Fitted-model labels in Markdown”
2024-05-28	“Looking back 40 years”
2024-05-16	“Is this a polynomial?”
2024-04-17	“Annotating Plot Matrices”
2024-02-10	“Repository migrated to R-Universe”
2024-01-13	“ooacquire: Spectral Irradiance Algorithms”
2023-11-27	“Linear Models”
2023-11-21	“Theoretical probability distributions”
2023-11-18	“Flow of code execution”
2023-10-30	“Introduction to Data Visualization”
2023-10-21	“photobiology 0.11.x”
2023-10-21	“Design of Experiments”
2023-09-19	“R at its simplest”
2023-08-19	“Research as a process”
2023-08-19	“Research as a process”
2023-08-14	“Multiple comparisons with ggpmisc”
2023-08-01	“Pairwise labels with ggpp”
2023-07-31	“Open Access Weather and Climate Data”
2023-07-30	“Timelines with ggplot2”
2023-06-25	“Fitted-model labels with ggpmisc and plotly”
2023-06-24	“Fitted-model labels with ggpmisc and gganimate”
2023-06-10	“ooacquire 0.4.x”
2023-06-02	“Functional analysis of spectra with photobiology to fda.usc”
2023-05-30	“Model fitting in R”
2023-05-30	“Randomization and independent replicates”
2023-05-28	“photobiology 0.10.1x”
2023-05-24	“EDA with ggplot2”
2023-05-21	“I have started using Mastodon…”
2023-05-11	“Plant photoreceptors”
2023-05-03	“ggplot2 Basics”
2023-04-27	“Spectral fluorescence with ooacquire”
2023-04-27	“ooacquire: Spectral Irradiance Measurement”
2023-04-15	“Weather data for Finland from FMI”
2023-04-10	“ooacquire 0.3.x”
2023-03-20	“OmniDriver, Java and the whims of companies”
2023-03-04	“R Packages”
2023-02-28	“Packages ggpmisc, ggpp and gginnards”
2023-02-28	“Nudging + repulsion with ggrepel and ggpp”
2023-02-27	“Website migrated to Quarto”
2023-02-27	“Fitted-model labels with ggpmisc”
2023-02-25	“Volcano and quadrant plots with ggpmisc”
2023-02-25	“Data labels in bar plots with ggpp”
2023-02-23	“ggplot insets with package ggpp”
2023-02-20	“Handbook on photobiological calculations with R”
2023-02-20	“A handbook of best practice in plant UV photobiology”
2023-02-19	“The R for Photobiology Suite”
2023-02-19	“Pedro J. Aphalo”
2023-02-18	“R, RStudio and Quarto”
2023-02-18	“Support”
2023-02-15	“About this Website”
2023-02-03	“ggspectra 0.3.10/0.3.11/0.3.12”
2023-01-05	“photobiologyWavebands 0.5.1”
2023-01-05	“photobiology 0.10.15”
2022-12-30	“Are plants and plant canopies flat?”
2022-12-23	“Visit to Universidad Austral de Chile”
2022-12-17	“Enhancing geom_text() and geom_label()”
2022-12-05	“ggpp >= 0.5.0 updates”
2022-10-18	“ooacquire 0.2.6”
2022-10-15	“An R marathon updating packages”
2022-10-15	“photobiologyInOut 0.4.25/0.4.26/0.4.27”
2022-10-15	“photobiology 0.10.14”
2022-10-15	“ggspectra 0.3.9”
2022-10-15	“gginnards >= 0.1.1 updates”
2022-10-05	“photobiology 0.10.13”
2022-10-01	“ooacquire 0.2.4 and 0.2.5”
2022-09-30	“ggpp 0.4.5”
2022-08-24	“Learn R: As a Language”
2022-08-13	“HTML5 compliance of R packages”
2022-08-13	“photobiologyWavebands 0.5.0”
2022-08-05	“ggpmisc >= 0.5.0 updates”
2022-07-23	“photobiology 0.10.12”
2022-07-10	“photobiology 0.10.11”
2022-06-15	“ggpmisc 0.4.7”
2022-05-15	“photobiologyInOut 0.4.24”
2022-05-14	“photobiologyLEDs 0.5.0”
2022-04-29	“R 4.2.0”
2022-04-16	“ggspectra 0.3.8”
2022-01-30	“Instrumentation”
2022-01-30	“Controlled Environment Chambers”
2022-01-29	“LED-based light sources”
2021-10-20	“What is plant intelligence? and what it is not?”
2021-10-17	“Sensing of solar UVA by plants”
2021-10-17	“Cryptochromes and stomatal opening”
2021-07-13	“Perception of solar UV radiation by plants”
2020-07-12	“Performance of package photobiology”
2020-04-25	“UVR8 is an UV-B and UV-A photoreceptor”
2019-04-24	“Benchmarking function `sun_angles()`”
2019-02-22	“Yoctopuce modules: Spectrometer”
2019-02-21	“Yoctopuce modules: Introduction”
2018-08-10	“Using the Quick TUV Calculator”
2017-11-24	“Article titles in the era of the internet”
2016-09-15	“For those interested in optical properties”

Posts and pages at Photo Rumblings and Whispers

The Photo Rumblings and Whispers has 27 posts since 2015-10-18! I have recently rebuilt the site using Quarto, and I have transferred most of the posts originally published using WordPress. I may add one or two old posts. The figure below shows original publication date even when posts and pages have been later updated. I have updated several of the posts and pages and I aim to continue updating them as needed. The source files are in a public repository at GitHub.

I have published one post or page roughly every days, or about 0.3 posts per month, since 2015-10-18.

I published the most recent post or page 154 days ago.

📂 Click to expand a full list of posts.

Date	Title
2024-02-11	“The nitty-gritty details of macrophotography”
2023-08-28	“Photographing Insects: Lenses”
2023-08-22	“WordPress -> Quarto”
2023-08-21	“Pedro J. Aphalo”
2023-05-13	“Flexible and oversized lens hoods”
2023-04-18	“About this Website”
2023-04-15	“UV short-pass filter stacks”
2023-04-14	“UV short-pass filters”
2023-04-12	“Notes on the OM-1 (digital) camera”
2022-10-15	“Small fill/video LED lights revisited”
2021-10-25	“Broad band VIS+NIR LEDs”
2021-08-21	“Photo Rumblings and Whispers”
2021-02-01	“NIR long-pass filters”
2020-09-29	“Hemispherical time-lapse under a tree”
2020-06-30	“Lens Adapter with Filter Drawer”
2020-06-30	“Lens Adapters: Flange-to-Flange Distance”
2020-06-12	“UV-cut filters”
2020-06-11	“UV-IR-cut filters”
2019-08-21	“A time lapse video assembled in ImageJ”
2019-07-14	“Godox AD200 flash for UV, VIS and IR photography”
2019-07-14	“Digital UVA-photography with M43 equipment”
2019-06-19	“Lautaret”
2019-05-11	“Neutral Density (ND) Filters”
2018-05-13	“Camera objectives for digital UV photography”
2017-12-12	“Black anodised aluminium in IR”
2017-10-28	“Photographs through windows”
2015-10-18	“Bracketing”

Updated 2024-07-14 10:33:58.507133

This README file is based on the blog post by Athanasia Mo Mowinckel and the R code by Martin Henze.

aphalo / ggplot2 Goto Github PK

ggplot2's Introduction

Computing-related Skills

IDE/GUI’s I like

Elsewhere

R Packages

Posts and Pages at R for Photobiology

Posts and pages at Photo Rumblings and Whispers

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