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DBIC

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hb6207's Issues

Upload Rsync all inbox data to discovery and set up automatic regular sync

TO DO: DBIC-wide pipeline for BIDS conversion -> fmriprep/qc -> tracking in JedCap dashboard

Write summary about DBIC INBOX upgrade and Server downtime on Jan 17 2023

Create dbiclog for work tasks

Follow up with yarik's question about jedcap

our JEDCap -- what is it really used for?

Yaroslav Halchenko [email protected]	Wed, Jan 11, 2023 at 10:57 AM
To: "Tor D. Wager" [email protected], Andrew Connolly [email protected]
Hi Tor and Andy,I am at ReproNim meeting, and we are discussing harmonization of variousmetadata. I wonder if our JEDCap is used at all for anything beyond"Register a subject and MRI accessions", e.g. as to contain projects'assessments etc?Would we want to centralize / provide such a feature at the level of theDBIC? (something to discuss may be at next steering committee meeting).BTW -- I would recommend this webinar/paperhttps://youtu.be/zFr8DyTGhxQhttps://www.frontiersin.org/articles/10.3389/fdata.2022.988084/fullThank you in advance for the clarification	Hi Tor and Andy,I am at ReproNim meeting, and we are discussing harmonization of variousmetadata. I wonder if our JEDCap is used at all for anything beyond"Register a subject and MRI accessions", e.g. as to contain projects'assessments etc?Would we want to centralize / provide such a feature at the level of theDBIC? (something to discuss may be at next steering committee meeting).BTW -- I would recommend this webinar/paperhttps://youtu.be/zFr8DyTGhxQhttps://www.frontiersin.org/articles/10.3389/fdata.2022.988084/fullThank you in advance for the clarification
Hi Tor and Andy,I am at ReproNim meeting, and we are discussing harmonization of variousmetadata. I wonder if our JEDCap is used at all for anything beyond"Register a subject and MRI accessions", e.g. as to contain projects'assessments etc?Would we want to centralize / provide such a feature at the level of theDBIC? (something to discuss may be at next steering committee meeting).BTW -- I would recommend this webinar/paperhttps://youtu.be/zFr8DyTGhxQhttps://www.frontiersin.org/articles/10.3389/fdata.2022.988084/fullThank you in advance for the clarification

Set up secondary DICOM receive server on Commissure

Review and update SOPs and print out hard copies for DBIC scan room

Check out Eye-Tracker troubles re courtney email

Hi Daniel and Adam (cc: Terry and Andy),

I hope you're both doing well and that you made it safely into Moore this morning!

I'm emailing you because you both have scans booked tonight, and I think you both use the eyetracker for your studies. The Wager lab let me know that the were experiencing an intermittent issue with the eyetracker (it was happening roughly every other subject), where the eyetracker wouldn't start up/calibrate. If either of you experience issues with the eyetracker tonight, could you please email Terry and Andy and give them a little context about what was happening if/when there was an error?

I'm hoping there's not an issue, but just in case.

Thanks!

Courtney

TO DO: Write SOP for Metal DEtector

Enhance Eye-tracker SOP

Design and implement survey asking DBIC users what additional large public datasets they might want the DBIC to host

BEcome member of https://github.com/nipy/heudiconv/

Clean up and organize Moore Server room

Fix modify acl on discovery for DICOM archive

fix Cosan lab server

Fix logins for yoh and kodi on dbic-mrinbox, edit etc/passwd/group

courtney test

Follow up with RC about 10G cable and Discovery mounts to INBOX

Create backup bootable thumb drives for all DBIC servers

Add virtual machine start up to cron for Neurolearn

ssh -p 1022 neuro-learn from wernicke
then
virsh start cosanlabradio
cosanlabtv
cosanlabresearch
neurolearn-01
neurolearn-02
neurolearn-03

Write script for CON reprostim tsync

Update Sys Report for changes to INBOX

Design & implement QC & weekly reports on who has been run

Follow up with JD email about spreadsheet and hyperscanning meet on monday

Update teh cron jobs on inbox

DBIC-wide Slack forum

supported through the college

Add info about increased storage capacity on Discovery to SR

Procure HCP data averages for Tor

Looking for average time courses and motion parameters for all 1200 subjects. DVARS

TO Do: Complete DBIC-admin backup plan for Kodi to cover Andy while on vacation.

Set up and meet with Kodi
Add instructions and concise backup plan to DBIC Sys report
Cover Adding DBIC users to Rolando and to DBIC-Discovery credentials
Cover Restarting essential systems - i..e. for failure due to power outage, etc.

Set up dbic MRI data on Discovery

Follow up with insufficientAccessRights error for rc-DBIC-psych160 and rc-DBIC-admin

This was in respnse to email request:

Dear Dr. Connolly,

This is Kexin Cai, a first-year graduate student at the PBS department. I was wondering if I could be granted access to the cluster directory /dartfs/rc/lab/D/DBIC/ so that I could have access to the Psy160 course resources. My details are as below. Thank you for your help!

Name: Kexin Cai
NetID: f006cn2

Have a great week!

Best,
Kexin

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