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Chandana Kodiweera's Projects

bibsnet icon bibsnet

This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model for the purposes of circumventing JLF within Nibabies.

cabinet icon cabinet

CABINET is a utility for running containers back to back.

canlabcore icon canlabcore

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

dbicqa icon dbicqa

In this repo, I'm going to make avalable fbirn scripts (pipeline) and information about docker/singulartiy container used to produce results shown in https://www.dartmouth.edu/dbic/research_infrastructure/qualityassurance.html

difit icon difit

A diffusion MRI models fitting software

hypertools icon hypertools

A Python toolbox for gaining geometric insights into high-dimensional data

hypertools-matlab icon hypertools-matlab

A set of generic and widely useful tools for manipulating and visualizing high-dimensional data.

mcribs icon mcribs

Surface version of the M-CRIB atlases.

mrqa icon mrqa

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

mrtrix3 icon mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

nibabies icon nibabies

Processing tools for magnetic resonance images of infant brains

nltools icon nltools

Python toolbox for analyzing imaging data

rsatoolbox icon rsatoolbox

Python library for Representational Similarity Analysis

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