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License: MIT License
Multi-threaded approach to compute the BWT and the LCP array of a set of strings
License: MIT License
I tried this program, but results change with each running when using multi-threads.
The execution environment is as follows:
I did an experiment for following data (test.fasta) using 8 threads.
Data (test.fasta)
>read1
GTCCGTACGTACTGCATGCAGTACTGGTCAGTCAGTCGTACGTACGTCG
Command
$ ./bwt_lcp test.fasta 8
Then, the following BWT strings was output for each execution. (decoded by ./decode_bwt
)
GTTTTTCCCCGTTGTTTCAAAAACTTTCCCCAGA$CAGGGGGGGGGGACC
GTTTTTCCCCGTTGTTTCAAAAACTTTCCCCAGA$CAGGGGGGGGGGCAC
I think the first one is correct.
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