Large genome reassembly based on Hi-C data (continuation and partial rewrite of GRAAL)

This work is under continuous development/improvement - see GRAAL for information about the basic principles of GRAAL and on how to deploy it.

Until more detailed documentation is added, run the following to see options:

python main_single_proc.py -h 

Unlike GRAAL, this is meant to be run from the command line.

Lingering artifacts found in output genomes can be corrected by editing the info_frags.txt file, either by hand or with a script. Look at options by running the following:

python parse_info_frags.py -h