alexcorm Goto Github PK
Name: Alexandre Cormier
Type: User
Company: Ifremer
Bio: Bioinformatics engineer @SeBiMER
Twitter: AllanSSX
Location: Brest
Alexandre Cormier's Projects
agnostos-wf
augustus
Genome annotation with AUGUSTUS
biocode
Bioinformatics code libraries and scripts
boss
A new algorithm for scaffolding
braker_singularity
Singularity def file template for BRAKER
developments-in-next-generation-sequencing
Developments in next generation sequencing: instruments, read lengths, throughput. See
ectocarpus_scripts-1
Scripts and materials needed to reproduce results and figures in the instaGRAAL showcase paper
elconcatenero
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
galaxy-hub
Galaxy Community Hub
instagraal
Large genome reassembly based on Hi-C data. Continuation of GRAAL Software from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), and Marie-Nelly 2013, PhD thesis (https://www.theses.fr/2013PA066714)
ion-wisecondor
Life ion torrent plugin using wisecondor
ionctdna
Ion Torrent plugin to etimate the proportion of circulating tumor DNA in blood samples
ionnipt
ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction
ionplotcoverage
ThermoFisher Ion Torrent plugin to plot amplicon coverage
m2-ggb
mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
online-cv
A minimal Jekyll Theme to host your resume (CV)
quick_phylo_busco
sanefalcon
SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genome-wide nucleosome profiles.
scop
A novel scaffolding algorithm based on contig classification and optimization
scratch
Unfinished or one shot scripts
sgtr
Visualize population genomics analyses results in R
tips
tools
training-material
A collection of Galaxy-related training material
wisecondor
WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using whole-genome data. NEWS: NOW INCLUDES AN INTERACTIVE RESULT BROWSER.
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