aeisenbarth / ngff-writer Goto Github PK
View Code? Open in Web Editor NEWA writer and reader for NGFF OME-Zarr datasets
A writer and reader for NGFF OME-Zarr datasets
Thanks for this useful repo! I have a question about best practices.
We have data that can be tczyx
ordered. We generate one zyx
volume, held in an ndarray
, at a time by iterating over all channels and times stored in a raw data structure created by our custom microscope on the disk. Writing and reloading this data works, so that is very helpful.
As part of the OME-zarr, we'd like to store metatdata contain the time interval between each zyx
volume and the zyx
pixel sizes. It isn't totally clear to us how to append this metadata at the moment. Is there a best practices on how to go about this? I briefly looked through the tests and examples and did not see this. From the example, it is clear how to name the channels and add affine transformations.
Thanks!
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