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adv-r

Advanced R: a book

affinder

Quickly find the affine matrix mapping one image to another using manual correspondence points annotation

affine_transform_debugging

debugging what some affine transform implementations actually do

algorithms

Minimal examples of data structures and algorithms in Python

alicevision

Photogrammetric Computer Vision Framework

alpine-dask-docker

Tiny Dask Docker images based on Alpine Linux

anndata

Annotated data.

app-model

Generic application schema implemented in python.

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

asyncqt

asyncio + PyQt5/PySide2

awesome-data-labeling

A curated list of awesome data labeling tools

awesome-deep-learning-papers

The most cited deep learning papers

basic-gpu-binder

A basic binderised repository with GPU support

basic-yolo-keras

Easy training on custom dataset. Various backends (MobileNet and SqueezeNet) supported. A YOLO demo to detect raccoon run entirely in brower is accessible at https://git.io/vF7vI (not on Windows).

batchflow

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

bayesiantracker

Bayesian multi-object tracking

bif_care

Simple IPython based user interface to [CARE](http://csbdeep.bioimagecomputing.com/) a toolbox for Content-aware Image Restoration.

bigstitcher-spark

Running compute-intense parts of BigStitcher distributed

bioformatsread

This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.

bioimageanalysisnotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

biomagdsb

This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 2018 competition

bitpoll

brouter

configurable OSM offline router with elevation awareness, Java + Android

brouter-profiles

My profiles for bicycle/hiking/car Brouter routing offline service for Android ( supporting OSMAnd, LocusMap, OruxMaps )

canze

Take a closer look at your ZE car

cellpose

a generalist algorithm for cellular segmentation

cellprofiler

An open-source application for biological image analysis

cellprofiler-plugins

Community-contributed and experimental CellProfiler modules.

cellprofiler_hpc_daskjobqueue

This Repository demonstrates how to distribute Cellprofiler Jobs on HPC using Dask Jobqueue

chrisluts

A collection of LUTs for ImageJ/Fiji