Comments (3)
adw96
commented on July 17, 2024
Example of non-convergent model:
freq = c(2, 4, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 34, 38, 42, 43, 55, 57, 59, 70, 72, 73, 80, 89, 93, 94, 96, 100, 111, 139, 149, 188, 232, 254, 295, 366, 436, 509, 551, 1296, 1450, 1777, 1836, 2324, 2643, 6468)
counts = c(5, 7, 7, 7, 5, 6, 1, 2, 2, 4, 2, 4, 2, 1, 4, 1, 1, 3, 1, 1, 1, 2, 1, 2, 1, 1, 2, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)
x = cbind(freq, counts)
breakaway::breakaway_nof1(x)
from breakaway.
adw96
commented on July 17, 2024
Another example:
breakaway_nof1(apples[-c(1:5), ])
from breakaway.
adw96
commented on July 17, 2024
library(breakaway)
packageVersion("breakaway")
freq = c(2, 4, 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 21, 22, 23, 24, 25, 34, 38, 42, 43, 55, 57, 59, 70, 72, 73, 80, 89, 93, 94, 96, 100, 111, 139, 149, 188, 232, 254, 295, 366, 436, 509, 551, 1296, 1450, 1777, 1836, 2324, 2643, 6468)
counts = c(5, 7, 7, 7, 5, 6, 1, 2, 2, 4, 2, 4, 2, 1, 4, 1, 1, 3, 1, 1, 1, 2, 1, 2, 1, 1, 2, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)
x = cbind(freq, counts)
breakaway::breakaway_nof1(x)
breakaway_nof1(apples[-c(1:5), ])
from breakaway.
Related Issues (20)
- population richness estimates are lower than sample richness estimates HOT 1
- error when using the function build_frequency_count_tables () HOT 3
- rename branch `master` to `main` HOT 1
- Betta: Standard errors same for almost all factor levels HOT 2
- breakaway::breakaway for deep-sequencing results having an evenly distributed frequency table HOT 1
- kicked off CRAN, grrrr HOT 5
- CRAN issues: internals from lme4 HOT 1
- checking for unstated dependencies in vignettes ... NOTE HOT 1
- warnings in test-betta.R HOT 1
- Request: Adjust p-value digits HOT 3
- Plug-in estimates and breakaway estimates are the same HOT 3
- Parameter descriptions for objective Bayes functions
- R session crashes when fitting betta model HOT 6
- Include new tests to increase code coverage to 90%
- Can this package be used for accurate calculation of alpha diversity in meta-analysis？ HOT 4
- General questions: Estimated richness lower than observed richness HOT 3
- Question regarding the video from Riffomonas Project HOT 1
- Parameter "initial_est" in betta function HOT 2
- Model selection from betta_random() using AIC or alternatives HOT 2
- plot(breakaway(frequencytablelist[[1]])) gives NULL HOT 3
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from breakaway.