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ailurophilia avatar ailurophilia commented on August 15, 2024

Hi – thanks for bringing this to our attention! I'm looking into the behavior of build_frequency_count_tables, so I may have a more detailed answer in the next few days, but in the meantime, I highly recommend looking at cov_table – what do entries of the cov_table look like if you run head(cov_table) or View(cov_table)? This may provide the most useful information.

from breakaway.

ailurophilia avatar ailurophilia commented on August 15, 2024

Short follow-up: it looks like the convert function in breakaway (which build_frequency_count_tables calls) may throw this error if it is fed a character vector. Have you checked that the columns t(cov_table) are numeric vectors and not character vectors? Thanks!

from breakaway.

adw96 avatar adw96 commented on August 15, 2024

Closing this issue -- conclusion is that we think that there are characters in the data given to build_frequency_count_tables. Thanks for checking in and let us know if you have other questions, @fadwaMeh !

from breakaway.

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