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alpha-error-rates

Estimating Type 1 and 2 error rates for diversity testing

antirarefaction

Code accompanying "Rarefaction, alpha diversity, and statistics"

atom-talon

Atom package for integration with Talon (talonvoice.com)

biost509

Class materials for BIOST 509

biost561shoppinglist

Our class' shopping list (HW 5c)

biostat561

Course materials for BIOST561

bnstruct

R package for Bayesian Network Structure Learning

breakaway

Species richness with high diversity

catchall

Species richness estimation in R

catchall-tools

Running CatchAll en masse

confidencesets

Code accompanying my confidence sets research

differential-abundance-theory

A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.

divnet

diversity estimation under ecological networks

divnet_supplementary

This code reproduces all results in the DivNet manuscript

geoweight

Statistical weighting and debiasing tools for geochemistry

papers

Copies and preprints

personalpkg

My personal R package

platynereis-gametogenesis-kuehn-et-al-2021

This repository contains all the codes and other documents related to the manuscript Kuehn et al 2021.

presentations

Presentations of potentially broad interest

q2-breakaway

QIIME2 plug-in for breakaway

q2-corncob

QIIME2 Plug-in for CORNCOB

rademu

shotgunseq

Statistical machine learning for shotgun metagenomic data

simulator

An Engine for Running Simulations

stamps

Course materials for STAMPS @ MBL

stamps2018

Amy's teaching materials for STAMPS @ MBL in 2018

statdivlab

Resources for members and collaborators of the Statistical Diversity Lab

summer-institutes

Course materials for Probability and Statistical Inference (SISG/SISMID)

talon_beta_user

My commands for talon beta

talon_user

Amy's user folder for talon