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Genomics datastructures using Apache Arrow
Hello,
I am trying to follow all your instructions but without any luck.
Steps I have done:
sudo singularity build --sandbox BWA Singularity
sudo singularity build BWA.simg BWA
sudo singularity shell BWA.simg
--> byt then error occured ERROR: /bin/sh does not exist in container
Best,
Bartek
Hi thanks for this looks really interesting.
Did you actually refactor BWA to work with arrow? If so, then any chance I can look at the source?
Were other tools refactored to work with arrow as well? Iโm interested in moving my tool chain to use plasma + arrow.
This is the error i am getting. I am not able to find GSerializeRecordBatch in any library/ code @tahashmi
main.o: In function create_plasma_object': /home/patelasx/new/bwa/main.c:110: undefined reference to
GSerializeRecordBatch'
/home/patelasx/new/bwa/main.c:133: undefined reference to garrow_buffer_get_databytes' main.o: In function
arrow_plasma_create':
/home/patelasx/new/bwa/main.c:146: undefined reference to arrow_builders_finish' main.o: In function
main':
/home/patelasx/new/bwa/main.c:171: undefined reference to `arrow_builders_start'
collect2: error: ld returned 1 exit status
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