abmi / socratex Goto Github PK

1. Sample documents of the topics need to be showed
2. set.seed() need to be set before LDA

1. JSON saving function is not working
2. Uploading and downloading JSON data and JSON schema is needed

The JSON documents are not fully inserted into Elasticsearch when using RShiny.
Perhaps the reason is because of the arrays of JSON structure.
(See elastic/kibana#3333)

1. Currently uploading JSON data into Elasticsearch is coded using Java.
   • options
   1. Make Java code works in R
   2. Create R code that can insert JSON data into Elasticsearch

Not always but sometimes the error (a picture above) occurs while installing SOCRATex package.
Seems like one of the packages used in SOCRATex is causing the error.
Needs to be fixed.

1. ATLAS Cohort extraction function is not available now
2. note_text extraction according to the note_types is not available
3. A single note_type of a single condition diagnosed patients contains reports of diverse organs or anatomic sites. Additional preprocessing such as adding user-defined regexpr or term selection is needed