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LAMBDA

An R package of model based clustering for flow and mass cytometry data

Authors:

Ko Abe and Teppei Shimamura

Contact: ko.abe[at]med.nagoya-u.ac.jp and shimamura[at]med.nagoya-u.ac.jp

Installation

Install the latest version of this package from Github by pasting in the following.

devtools::install_github("abikoushi/LAMBDA")

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Installation problems

Hi there,

I'm trying to install LAMBDA but I'm getting this error. I cannot see if the problem it's mine or is because there's something strange within the package (because All text must be in a section ERROR: installing Rd objects failed for package ‘LAMBDA’).

> devtools::install_github("abikoushi/LAMBDA")
Downloading GitHub repo abikoushi/LAMBDA@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All                                             
2: CRAN packages only                              
3: None                                            
4: RcppArmad... (0.9.900.2.0 -> 0.9.900.3.0) [CRAN]

Enter one or more numbers, or an empty line to skip updates:1
RcppArmad... (0.9.900.2.0 -> 0.9.900.3.0) [CRAN]
Installing 1 packages: RcppArmadillo
trying URL 'https://cran.rstudio.com/bin/macosx/contrib/4.0/RcppArmadillo_0.9.900.3.0.tgz'
Content type 'application/x-gzip' length 1871293 bytes (1.8 MB)
==================================================
downloaded 1.8 MB


The downloaded binary packages are in
	/var/folders/dl/zj51mknn0x17lp376dpx_j3r0000gn/T//Rtmpchi70Y/downloaded_packages
✓  checking for file ‘/private/var/folders/dl/zj51mknn0x17lp376dpx_j3r0000gn/T/Rtmpchi70Y/remotes227a6cc21746/abikoushi-LAMBDA-cbaece7/DESCRIPTION’ (476ms)
─  preparing ‘LAMBDA’:
✓  checking DESCRIPTION meta-information ...
─  cleaning src
─  installing the package to process help pages
─  saving partial Rd database (18.1s)
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘LAMBDA_1.0.tar.gz’
   
* installing *source* package ‘LAMBDA’ ...
** using staged installation
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c EMmixGauss.cpp -o EMmixGauss.o
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o LAMBDA.so EMmixGauss.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-LAMBDA/00new/LAMBDA/libs
** R
** byte-compile and prepare package for lazy loading
** help
Error : (converted from warning) /private/var/folders/dl/zj51mknn0x17lp376dpx_j3r0000gn/T/Rtmpf1X2FJ/Rbuild24f456a626ab/LAMBDA/man/LAMBDA-package.Rd:26: All text must be in a section
ERROR: installing Rd objects failed for package ‘LAMBDA’
* removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/LAMBDA’
Error: Failed to install 'LAMBDA' from GitHub:
  (converted from warning) installation of package ‘/var/folders/dl/zj51mknn0x17lp376dpx_j3r0000gn/T//Rtmpchi70Y/file227a4d606425/LAMBDA_1.0.tar.gz’ had non-zero exit status

I'm running it in a macOS Mojave.

Any idea, please? Thanks in advance.

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