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CarveMe is a python-based tool for genome-scale metabolic model reconstruction.

For more details please check: http://carveme.readthedocs.io/

Can be easily installed using pip:

pip install carveme

Additionally, you must install diamond and CPLEX (please check the documentation for details).

For citation purposes please refer to our paper:

D. Machado et al, "Fast automated reconstruction of genome-scale metabolic models for microbial species and communities", Nucleic Acids Research, gky537, 2018.

DOI: https://doi.org/10.1093/nar/gky537

Developed at the European Molecular Biology Laboratory (2017-2018). Released under an Apache License.