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100-days-of-ml-code

100 Days of ML Coding

18s191

Course 18.S191 at MIT, Spring 2021 - Introduction to computational thinking with Julia:

aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

annotated-transformer

An annotated implementation of the Transformer paper.

awesome-bioimage-analysis-challenges

A list of awesome bioimage analysis challenges

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-biological-visualizations

A list of web-based interactive biological data visualizations.

baysor

Bayesian Segmentation of Spatial Transcriptomics Data

big-fish

Toolbox for the analysis of smFISH images.

cell2sentence-ft

Cell2Sentence turns scRNA-seq data into text for LLM training.

cellprofiler

An open-source application for biological image analysis

datascience_book

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

forgi

An RNA manipulation library.

gen242

ipa4lsx

ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX

juliadatascience

Book on Julia for Data Science

linux-cheatsheet

Comprehensive Linux Cheatsheet

machine-learning-mindmap

A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.

machine-learning-yearning

Machine Learning Yearning book by 🅰️𝓷𝓭𝓻𝓮𝔀 🆖

merfish_mouse_brain_receptor

miccheck

Microscopy Metadata Checklist Generator in Shiny

mit-deep-learning-book-pdf

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

mitoclone

netbid

Data-driven Network-based Bayesian Inference of Drivers

neubias-webinar

Resources for part 1 of the NEUBIAS@home webinar on SMLM analysis

neubias_academy

notebook

Jupyter Interactive Notebook

primerdesign

Package to design primers for MutaSeq and related methods

python-cheatsheet

Comprehensive Python Cheatsheet