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fgwas

GWAS tools for longitudinal genetic traits based on fGWAS statistical model

g2s3

G2S3 (Sparse and Smooth Signal of Gene Graph-based imputation)

g2s3_paper2020

idesc

iDESC package for DE analysis in scRNA-seq data

lbrat

R package for retrospective association testing for longitudinal binary traits

lskat

lsrat

R package for retrospective variant-set testing for longitudinal traits in genome-wide association studies

mageit2

Marginal Gene-Environment Interaction Test with RANdom or FIXed

rsit

R package that performs retrospective set-based gene-environment interaction tests for binary traits.

rsvmmat

R package that performs retrospective set-based varying coefficient mixed model association tests for longitudinal binary traits.

rvmmat

R package that performs retrospective varying coefficients mixed model association test for longitudinal binary traits in population samples.

sdeper

SDePER is a two-step hybrid machine learning and regression method considering platform effect, spatial information and sparsity in deconvolution of spatial transcriptomic data using reference single-cell RNA sequencing data. It's also able to impute cell type compositions and gene expression at enhanced resolution.

sdeper_analysis

This Github repository holds Notebooks and results of running SDePER on both Simulated and Real datasets, and Notebooks for Figure Panels in manuscript.

trftarget

tRFtarget (http://trftarget.net/) is a comprehensive platform consolidating both computationally predicted and experimentally validated binding interactions between transfer RNA-derived fragments (tRFs) and target transcripts across multiple organisms.

trftarget-pipeline

tRFtarget-pipeline is designed to find RNA-RNA interaction sites between transfer RNA-derived fragments (tRFs) and target RNAs, and is used in tRFtarget database (http://trftarget.net/).