Comments (3)
hi @Ngort, as this function returns a Dandelion
object, you could also just do:
ddl.tl.define_clones(vdj, ...)
vdj.write_airr("after_define_clones.tsv")
this would probably be simpler than trying to rejig the code inside
from dandelion.
i'm added in #288 the option out_dir
to ddl.tl.define_clones
from dandelion.
Thank you!
from dandelion.
Related Issues (20)
- org in reassign_alleles and creategermlines not used
- Adapt the new scverse AIRR data structure HOT 19
- Running the google colab version, I am getting a type error at step 3 when importing dandelion as ddl HOT 4
- Manual preprocessing with Pandas>1.4+ HOT 3
- ddl.tl.define_clones(vdjx, key_added="changeo_clone_id", model="hh_s5f") HOT 2
- Singularity not finding meta file HOT 3
- Installation error using Singularity: FATAL: While getting image info: error decoding image: invalid ObjectId in JSON HOT 1
- UnboundLocalError: local variable 'dist_ham' referenced before assignment
- Define clones within each group HOT 3
- Accept metadata column as clones for germline inference (pp.create_germlines) HOT 3
- tigger pipeline not working on master
- pandas.DataFrame.iteritems() deprecated
- Determine which receptor arms to define clones by HOT 7
- CI failing because can't download the demo.h5ad from kp9's folder HOT 2
- Mouse VDJ Data
- Dandelion singularity (v0.2.4) cannot quantify mutation HOT 6
- Singularity - C call correction local variable referenced before assignment HOT 4
- speed up minimum spanning tree step HOT 1
- generate network in 0.3.4dev is not working the same way as 0.3.3
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