Accept metadata column as clones for germline inference (pp.create_germlines) about dandelion HOT 3 CLOSED

I'm actually thinking of torching this entire code chunk and just replace it how ddl.pp.ext.create_germlines calls CreateGermlines.py directly + the additional args option in #280

This would trivialise the requirement to keep this function updated in its current state. as this will probably involve a bit of rework, my suggestion for now is to run CreateGemlines.py manually while i rework this two functions (they impact on quite a bit of code so i'll have to take my time to comb through it).

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@Ngort hi, if you try the branch at #288 pip install git+https://www.github.com/zktuong/dandelion@path-update, you should now be able to do the above with adding additional arguments just like in #279

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Thank you very much. My HPC is in maintenance but will try it asap :).

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