This script is used to do blastn on ONT read data agaisnt a local NCBI nt database.
It is designed to be used by NCI user of xf3 project.
All the scripts, database, and test data are placed in /g/data/xf3/blastn_database.
The script to be submitted to NCI is called blastn2.12.sh because it runs blastn v2.12.0.
The test data can be used for a try are in /g/data/xf3/blastn_database/fastq. The script will process all the fastq files in the dircetory.
The outputs of blastn on test data are in /g/data/xf3/blastn_database/blast2.12_output.
You can login NCI and run the script for a quick check:
qsub /g/data/xf3/blastn_database/blastn2.12.sh