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r-in-centos-7

Use R!

rideogram

ripseq-listeria

RIP-Seq and RNA-Seq of an RNA-binding protein secreted by Listeria monocytogenes which activates RIG-I signaling Secreted bacterial

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

seqplots

:chart_with_upwards_trend:SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

smcpp

SMC++ infers population history from whole-genome sequence data.

spermatogenesis

Code accompanying Alavattam et al., Nat Struct Mol Biol, 2019

svpv

Structural Variant Prediction Viewer

teanalysis

Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.

telescope

Quantification of transposable element expression using RNA-seq

test_circos

the-art-of-command-line

Master the command line, in one page

viewbs

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data

widespread-long-range-cis-regulatory-elements-in-the-maize-genome

scripts used for processing and analyzing data in the article.