Name: Hassan Rasouli
Type: User
Bio: I am an academic freelance researcher, working on natural products, protein-protein interactions, plant-microbiome interactions and playing with R codes :)
Twitter: H3nRasouli
Location: Iran
modeller
molprobity
Protein and nucleic acid validation service
mpbuilder
MPBuilder provides building capability for protein-detergent, bicelle, and lipid-scaffold (saposin nanoparticles, nanodiscs) complexes and links this to the ATSAS software package modules for model refinement and validation against the SAXS data.
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
pmw-patched
Fork of Python megawidgets with essential patches applied
protein-refinement-
pycircos
python Circos
pylipid
A python toolkit for analysing membrane protein-lipid interactions.
pymod
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
qrqc
Quick Read Quality Control
ramachandran-plot
R code & Python code for creating Ramachandran Plot (MAT Feature)
rap-green
Phylogenetic tree management, exploration and display package
rbibutils
Convert bibliography files between various formats, including BibTeX, BibLaTeX, PubMed, RIS, and Bibentry. This is an R port of the bibutils utilities plus R manipulation of bibiliography objects.
reinvent
Molecular De Novo design using Recurrent Neural Networks and Reinforcement Learning
rnabio.org
website for the rnaseq course
rosettafold
This package contains deep learning models and related scripts for RoseTTAFold
scripts
Personal Script Library- These scripts are subject to change and breakage, early and often.
shinycircos
an R/shiny application for creation of Circos plot interactively
sickle
Windowed Adaptive Trimming for fastq files using quality
sra-tools
SRA Tools
sra-tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
students
Free tools for biologists and biochemists
swift-modeller-v2.0
tbtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
virtual-screening-files
vs-analysis
VS-Analysis: A Python Script to Analyze Virtual Screening Results of Autodock Vina
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
