error running HetMajorityProb.py about 2brad_denovo HOT 5 OPEN

On Jul 9, 2019, at 10:54 AM, nspope ***@***.***> wrote: Whoops, you'd also need to escape the dollar signs in this case: ... | awk "\$6 < 0.75 {print \$1\"\t\"\$2}" >allSites — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1?email_source=notifications&email_token=ABZUHGAKRKDERWCWA2CA2Z3P6SRB5A5CNFSM4H7FAHCKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODZQQWIY#issuecomment-509676323>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ABZUHGH2PXVVEY7MGMKGKSLP6SRB5ANCNFSM4H7FAHCA>.

On Jul 9, 2019, at 8:30 AM, ovidp ***@***.***> wrote: We are having an issue running HetMajorityProb.py. Python version is 2.7.12 Can you please help? Thanks zcat sfilt.geno.gz | python ~/2bRAD_denovo/HetMajorityProb.py | awk '$6 < 0.75 {print $1"\t"$2}' > allSites awk: cmd. line:1: $6 < 0.75 {print $1"\t"$2} awk: cmd. line:1: ^ backslash not last character on line Traceback (most recent call last): File "/home/2bRAD_denovo/HetMajorityProb.py", line 28, in stdout.write("\t".join([chrom, pos, str(len(pr_heteroz)), str(num_heteroz), str(h_expected), str(utail_prob)]) + "\n") IOError: [Errno 32] Broken pipe — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1?email_source=notifications&email_token=ABZUHGAYEWROTWRIJYXDU7DP6SAIHA5CNFSM4H7FAHCKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4G6C24BA>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ABZUHGH5YH5DKFB6NEWCEOLP6SAIHANCNFSM4H7FAHCA>.