error in mapping. about methylpy HOT 4 CLOSED

Hey CS791,
Is this error reproducible? If you run your command again, will you get the same error?

Yupeng

from methylpy.

Hello! Yupeng,

Thank you! for your reply.
Yes! it does reproducible and I got the same error when I run with same input as well as other input files.

Thank you.
Regards

CS791

from methylpy.

Ok. If you use python2 instead of python3, would you still see this problem? This may be the quickest fix.

What output/intermediate files were generated when you ran methylpy? What are their sizes? Would it be possible for you to share some input files for me to reproduce this error? Thanks.

from methylpy.

Thanks again.
I will try with python2 instead of python3, and let you know.
As far as output files are concerned, surprisingly I got only two bam files of sizes around 216 MB. That might be possible as my reference is only transposable element genes, not the whole genome.
But I am not able to generate allc files.
Thank you! for suggestions.
I will let you know once I will do with python2

from methylpy.