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aitom's Introduction

AITom

AITom is a library for developping AI algorithms for cellular electron cryo-tomography analysis. Developped and maintained by Xu lab and collaborators: Yang lab.

The tomominer module was adapted from an extended version of the tomominer library.

Build library

Ubuntu

  1. install dependencies and build
sudo apt-get install python fftw3-dev libblas3 liblapack3 libarmadillo-dev
pip install -r requirements.txt
python setup.py build

Mac OS X

  1. Download FFTW3 and install it.
wget http://www.fftw.org/fftw-3.3.8.tar.gz
tar xvf fftw-3.3.8.tar.gz
cd fftw-3.3.8
./configure
make -j8
sudo make install
  1. install other dependencies using brew and pip.
xcode-select --install
brew install armadillo openblas lapack
pip install -r requirements.txt
  1. build library
python setup.py build

aitom's People

Contributors

xulabs avatar ijinjay avatar

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