yanjunzan Goto Github PK

irisas

Integrated region-based variants synchronization and Annotation for different inbreeding lines

leafcutter-pipeline

Differential splicing and visualisation pipeline for the Raj lab

lncpipe

lockdown-learning

Scripts written for my Bioinformatics-along on YouTube: https://www.youtube.com/playlist?list=PLzfP3sCXUnxEu5S9oXni1zmc1sjYmT1L9

metagenomics-workshop

Metagenomics Workshop

metagenomics-workshop-spring-2020

NCGAS is hosting a metagenomics workshop, focusing on whole genome sequencing metagenome analysis between April 20th to 22nd at Indiana University, Bloominton.

microbiome-analysis-using-r

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

mtmm

phenotypesimulator

pine

Chinese pine TE annotation

plinkqc

R package for quality control of plink genetic datasets

python-seminar

Python for Data Science (Seminar Course at UC Berkeley; AY 250)

qtcat

Quantitative Trait Cluster Association Test in R

rna-seq-variant-calling

Snakemake based workflow for calling Variants on RNA-Seq data in a joint calling mode

rna-snakemake

RNA-Snakemake

scikit-learn-videos

Jupyter notebooks from the scikit-learn video series

scripts

Scripts for analysis used during the course

scrna.seq.course

Analysis of single cell RNA-seq data course

short_read_sv_pipeline

snakemake_hisat-deseq

A Snakemake pipeline to analyse RNA-Seq reads

snakesv

Snakemake pipeline for SV discovery and analysis

statistical-learning-method_code

手写实现李航《统计学习方法》书中全部算法

stripes

Genotyping by low-coverage whole-genome sequencing in intercross pedigrees from outbred founders

td

Analysis script for imputation using TIGER

tfodapp

tfodcourse

tfodrpi

tgg

tomato graph pangenome

tobacco_bioinformatic_plartform

train-aquafaang-bioinf

AQUA-FAANG Bioinformatics training course on regulatory elements