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4000byxrm

analysis and data for 4000 BYxRM yeast QTL mapping experiment

agwa

Scripts for ancestry Genome Wide Association

ail-scan

apps-phenotyping

The following are scripts and instruction necessary to set up 4 Raspberry Pi Powered Imaging Platforms

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

be

biocode

Bioinformatics code libraries and scripts

bioinf2017

resources for bioinf meeting

bulk_rna-seq_workflow_snakemake

STAR, cufflinks, cluster, DESeq2, GO analysis

capitalfarmer

解析东方财富网上的API，包装成python库

cmplot

📊 Circular and Rectangular Manhattan Plot

comm-methylation

This repo is to collect the FAANG methylation group's code and pipelines

computational_biology

course material

config

data-science-interview-questions-answers

dip

UCLA QCBio Collaboratory workshop 21: Digital Image Analysis with Python

eccb2018_sc

Tutorial material for ECCB 2018, Athens

eqtl_byxrm

1000 BYxRM eQTL analysis and additional data

expression_r

R pipeline for detecting loss of function allele in expression QTL mapping

f2_re_seq

formatconversion

A collection of Perl scripts to convert between various DNA sequencing and SNP data formats.

freebayessnakemake

Freebayes Snakemake pipline

functional-annotation

Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.

gbsa

geta

gmat

Genomic Multivariate Analysis Tools

godstock

godstock, go go go!

grenepipe

Snakemake pipeline for variant calling from raw sequences

happy.hbrem

R package for QTL analysis of multi-parent RILs

hlmm