- A function to simulate a group of parent-progeny genotyped via GBS with different het/hom error rate
SimSelfer(size.array=20, het.error=0.7, hom.error=0.002, numloci=1000, recombination=TRUE)
- Visualize object returned from
SimSelfer
.
plotpa(sim, kids=10, cols=c("red", "blue"), ...)
- imputation rate
- error rate (phasing and imputation)
- efficiency
- others
- ProgenyArray
- ENT
- using mom + mom -> kid: imputation rate .85
- paper
- reHC-*
- mpimpute, source code
- LinkImpute
- Haploscribe
- Beagle trios
- MACH
- FIMPUTE
- findhap.f90
- PHASEBOOK
- Alpha{Phase, Impute}
- LDMIP
- SHAPEIT