Comparison of Deep Learning and PCA analysis for dimensionality reduction of scRNA-seq data
This project will use two algorithms:
- OnlinePCA (for PCA)
- scvis (for Deep learning)
The bkp folder has some old scripts and img.
Enter julia environment by writing julia into terminal and paste the following commands to set up. After setting up the environment you can use the shell files. algorithm971.sh
import Pkg;
Pkg.add("ArgParse")
Pkg.add("Blink")
Pkg.add("PlotlyJS")
Pkg.add("Distributions")
Pkg.add("DataFrames")
]add https://github.com/rikenbit/OnlinePCA.jl