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XiaoTaoWang avatar XiaoTaoWang commented on August 29, 2024

Hi, I have no idea about how this error only occurred with "--output-format NeoLoopFinder". However, if you have already obtained the predictions with "--output-format full", then you can do the format transformation using the command below:

$ merge-redundant-SVs --full-sv-files test.full.txt --output-format NeoLoopFinder -O test.NeoLoopFinder.txt

from eaglec.

tolender avatar tolender commented on August 29, 2024

I went through the predictSV code and ran the steps between lines 125 to 158 explicitly with the cache folders and worked as intended.
Seems the line that extract_cache_folder() was looking for in the log files were missing so it couldn't find the cache folders. Running EagleC locally and in parrallel in a two tmux sessions might have caused log updating issues. (just a guess)

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