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View Code? Open in Web Editor NEWCna and LOh analysis with SEquencing data
Cna and LOh analysis with SEquencing data
What is the best way to generate example input?
chr start end LAF logR
1 69223 4834523 0.445030335 -0.038606278
1 6100667 14142993 0.4375 0.042693104
1 15287258 29652142 0.436363636 0.015784217
1 31187134 49224726 0.448730884 0.023168458
1 50610744 55529187 0.430508475 0.021785292
1 56962256 57756669 0.445054945 -0.116237683
1 58946741 60538262 0.444444444 -0.025180032
1 61553894 68960245 0.454545455 0.055024334
1 74648361 77094390 0.437948718 -0.030715596
1 84335705 87805807 0.027402402 -0.902822842
Also, what would be the exact steps to follow; to go from a tumor/normal bam to CNV calls?
Thanks!
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