wukevin / rnagps Goto Github PK
View Code? Open in Web Editor NEWInterpretable model of sub-cellular RNA localization.
Home Page: https://rnajournal.cshlp.org/content/early/2020/03/27/rna.074161.119.full.pdf+html
Interpretable model of sub-cellular RNA localization.
Home Page: https://rnajournal.cshlp.org/content/early/2020/03/27/rna.074161.119.full.pdf+html
Hi Kevin,
I find this project really interesting and would like to try it out on one of our internal datasets. So, as a first step, I was trying to reproduce some of your results from the jupyter notebook jupyter/multi_localization/multi_localization_kmer.ipynb
, and right now I'm having a really tough time due to some issues. Some of the dependencies like biopython
, pyfaidx
, pytorch
, tqdm
are missing from the environment.yaml file and I've also noticed that there are a couple of files hard coded in data_loader module that are missing, for example, the files in line 72, 81 and line 159.
It would be great if you can upload the missing files somewhere or update the README.md with some additional information on how to reproduce these missing files.
Thank you for your help.
Hi, thank you for this great work.
When I used "nes_nls_rf.0.21.3.skmodel", I found it was just a list of model performance, not a saved model. So it seems that something wrong happened when it was uploaded.
Could you re-upload it if possible?
Thanks
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.