wisamreid Goto Github PK

ml-stat-util

Statistical functions based on bootstrapping for computing confidence intervals and p-values comparing machine learning models and human readers

mltutorials

Lab internal ML teaching tutorials for Google Colab

mmsegmentation_semantic_segmentation

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

mnist-cluttered

Cluttered MNIST Dataset

moco

motion correction

model-free_model-based_workshop

This folder contains all the material to be used in the FLUX 2021 Model-free and Model-based computational workshop

models

Models and examples built with TensorFlow

monai

AI Toolkit for Healthcare Imaging

morpho

R-package providing a toolset for (3D-based) Geometric Morphometrics

mouse-bandit-behavior

code to run 2 armed bandit type mouse behavior where the mouse decides to poke in left or right port for reward

mouse-brain-decoding-calcium

Decoding images from calcium recordings using data from stringer et al. 2018.

mouse-wheel

Simple task training a head-fixed mouse to run on a wheel

mouse_bandit

modeling mouse behavior in a multi-armed bandit task as a Bayesian bandit

mril_codes

naomi-sim

napari

napari: a fast, interactive, multi-dimensional image viewer for python

nat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

nbgrader

A system for assigning and grading notebooks

negativecalciumresponses

netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

neuclease

Tools for computing interactive "cleaves" of agglomerated neuron fragments from a DVID server.

neural-alignment

neural-assembly-detection

Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biology 16:143 (2018) doi: 10.1186/s12915-018-0606-4.

neural-processes

This repository contains notebook implementations of the following Neural Process variants: Conditional Neural Processes (CNPs), Neural Processes (NPs), Attentive Neural Processes (ANPs).

neural_testbed

neurites

Detection of synapses on apposing neurites (Williams lab)

neuro-astro-network-grayscale

Neuro-Astrocyte Network

neuro-backprop_sacramento_2018_implementation

Implementation of 'Dendritic error backpropagation in deep cortical microcircuits', Sacramento, Senn 2017 in Python.

neuro-examples-glms-allen

Examples of neural analysis on real and simulated data

neuroconstruct

neuroConstruct: biophysically detailed neuronal modelling in 3D