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168874

Neuronal dendrite calcium wave model (Neymotin et al, 2015)

2d-animation-and-interaction_code_for_book_tutorials

Syllabi, handouts, and sketches for my creative coding course, 2D Animation and Interaction

2p_analysis_voigts

Tools for analyzing 2p data

2p_opto_filters_voigts

calculate filters for 2p opto

a-python-package

Example open source Python package with many of the fixings for PyPI publication

abptutorial

KITP tutorial codes for Active Brownian Particles

abstract-reasoning-matrices

Progressive matrices dataset, as described in: Measuring abstract reasoning in neural networks (Barrett*, Hill*, Santoro*, Morcos, Lillicrap), ICML2018

accpyr_lfp_dendrites

activematter-baltieri

adventures-in-ml-code

This repository holds all the code for the site http://www.adventuresinmachinelearning.com

affinewarp_ganguli

An implementation of piecewise linear time warping for multi-dimensional time series alignment

agave-3d-tiff

aics-ml-segmentation-allen

aics-segmentation-allen

Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow

aicsimageio-napari

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

aim_network

A cortical network model of attention

albumentations

Fast image augmentation library and an easy-to-use wrapper around other libraries. Documentation: https://albumentations.ai/docs/ Paper about the library: https://www.mdpi.com/2078-2489/11/2/125

all-cnn

Striving for Simplicity: The All Convolutional Net (All-CNN-C)

alphafold

Open source code for AlphaFold.

arrangechannels-stacktotiff

this macro is intended to convert the z-stack, multichannel images from .lif files into individual tif files in a batch method.

auditory-tonotopic-maps-classifier-cibm_project

Developing a classifier for tonotopic auditory maps

automated_cell_type_classification_2020

Classification tool of neuronal cell types based on Ca2+ data

automutualinformation

Auto Mutual Information (Sequential Mutual Information) for temporal data.

avgn_paper

Latent and generative models of animal vocalizations for songbirds, mice, primates, humans, cetaceans, etc.

awesome-data-labeling

A curated list of awesome data labeling tools

awesome-janelia-software

A curated list of awesome Janelia software

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-neural-data-tools

Tools, algorithms, and frameworks for managing and analyzing neural data.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

azure-machinelearningnotebooks

Python notebooks with ML and deep learning examples with Azure Machine Learning Python SDK | Microsoft