wenjun-liu / ssnappy Goto Github PK

> sessionInfo()
R version 4.2.1 (2022-06-23)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux 8.6 (Ootpa)

Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblaso-r0.3.15.so

locale:
 [1] LC_CTYPE=en_US.UTF-8          LC_NUMERIC=C                 
 [3] LC_TIME=en_US.UTF-8           LC_COLLATE=en_US.UTF-8       
 [5] LC_MONETARY=en_US.UTF-8       LC_MESSAGES=en_US.UTF-8      
 [7] LC_PAPER=en_US.UTF-8          LC_NAME=en_US.UTF-8          
 [9] LC_ADDRESS=en_US.UTF-8        LC_TELEPHONE=en_US.UTF-8     
[11] LC_MEASUREMENT=en_US.UTF-8    LC_IDENTIFICATION=en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] batchtools_0.9.15   BiocParallel_1.30.3 graphite_1.42.0    
 [4] DT_0.25             cowplot_1.1.1       magrittr_2.0.3     
 [7] forcats_0.5.2       stringr_1.4.1       dplyr_1.0.10       
[10] purrr_0.3.4         readr_2.1.3         tidyr_1.2.1        
[13] tibble_3.1.8        ggplot2_3.3.6       tidyverse_1.3.2    
[16] sSNAPPY_1.0.2       rj_4.0.8-4         

loaded via a namespace (and not attached):
  [1] googledrive_2.0.0           colorspace_2.0-3           
  [3] ellipsis_0.3.2              XVector_0.36.0             
  [5] GenomicRanges_1.48.0        fs_1.5.2                   
  [7] farver_2.1.1                graphlayouts_0.8.2         
  [9] ggrepel_0.9.1               bit64_4.0.5                
 [11] AnnotationDbi_1.58.0        fansi_1.0.3                
 [13] lubridate_1.8.0             xml2_1.3.3                 
 [15] splines_4.2.1               codetools_0.2-18           
 [17] cachem_1.0.6                polyclip_1.10-0            
 [19] jsonlite_1.8.2              broom_1.0.1                
 [21] dbplyr_2.2.1                png_0.1-7                  
 [23] graph_1.74.0                ggforce_0.4.1              
 [25] compiler_4.2.1              httr_1.4.4                 
 [27] backports_1.4.1             assertthat_0.2.1           
 [29] Matrix_1.5-1                fastmap_1.1.0              
 [31] gargle_1.2.1                limma_3.52.4               
 [33] cli_3.4.1                   tweenr_2.0.2               
 [35] prettyunits_1.1.1           htmltools_0.5.3            
 [37] tools_4.2.1                 igraph_1.3.5               
 [39] gtable_0.3.1                glue_1.6.2                 
 [41] GenomeInfoDbData_1.2.8      reshape2_1.4.4             
 [43] rappdirs_0.3.3              Rcpp_1.0.9                 
 [45] Biobase_2.56.0              jquerylib_0.1.4            
 [47] cellranger_1.1.0            vctrs_0.4.2                
 [49] Biostrings_2.64.1           nlme_3.1-159               
 [51] crosstalk_1.2.0             ggraph_2.0.6               
 [53] rvest_1.0.3                 lifecycle_1.0.2            
 [55] XML_3.99-0.11               googlesheets4_1.0.1        
 [57] org.Hs.eg.db_3.15.0         edgeR_3.38.4               
 [59] zlibbioc_1.42.0             MASS_7.3-58.1              
 [61] scales_1.2.1                tidygraph_1.2.2            
 [63] hms_1.1.2                   MatrixGenerics_1.8.1       
 [65] parallel_4.2.1              SummarizedExperiment_1.26.1
 [67] rj.gd_4.0.8-1               curl_4.3.2                 
 [69] yaml_2.3.5                  memoise_2.0.1              
 [71] gridExtra_2.3               pander_0.6.5               
 [73] sass_0.4.2                  biomaRt_2.52.0             
 [75] stringi_1.7.8               RSQLite_2.2.18             
 [77] S4Vectors_0.34.0            checkmate_2.1.0            
 [79] filelock_1.0.2              BiocGenerics_0.42.0        
 [81] GenomeInfoDb_1.32.4         rlang_1.0.6                
 [83] pkgconfig_2.0.3             matrixStats_0.62.0         
 [85] bitops_1.0-7                lattice_0.20-45            
 [87] labeling_0.4.2              htmlwidgets_1.5.4          
 [89] bit_4.0.4                   tidyselect_1.1.2           
 [91] plyr_1.8.7                  R6_2.5.1                   
 [93] IRanges_2.30.1              generics_0.1.3             
 [95] base64url_1.4               DelayedArray_0.22.0        
 [97] DBI_1.1.3                   mgcv_1.8-40                
 [99] pillar_1.8.1                haven_2.5.1                
[101] withr_2.5.0                 KEGGREST_1.36.3            
[103] RCurl_1.98-1.9              modelr_0.1.9               
[105] crayon_1.5.2                utf8_1.2.2                 
[107] BiocFileCache_2.4.0         tzdb_0.3.0                 
[109] progress_1.2.2              viridis_0.6.2              
[111] locfit_1.5-9.6              grid_4.2.1                 
[113] readxl_1.4.1                data.table_1.14.2          
[115] blob_1.2.3                  reprex_2.0.2               
[117] digest_0.6.29               brew_1.0-8                 
[119] stats4_4.2.1                munsell_0.5.0              
[121] viridisLite_0.4.1           bslib_0.4.0