wangjie07070910 Goto Github PK

100-days-of-ml-code

100 Days of ML Coding

atac-pipe

Analysis pipeline for ATAC-seq Data

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

awesome-linked-reads

Collection of tools and resources for linked-reads

biocode

Bioinformatics code libraries and scripts

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics-programming-using-python

This repository is a collection of notes I made while reading "Bioinformatics Programming Using Python" by Mitchell L Model.

bioinformatics-programming-using-python-1

Exercises from the 'Bioinformatics Programming using Python' book by Mitchell L Model

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

biotools

My own bioinfomatics tools or pipelines

bqplot

Plotting library for IPython/Jupyter notebooks

busco2tree

This pipeline helps to build a phylogenetic tree using the BUSCO results over a group of species/genomes/proteomes/transcriptomes.

c-csn

Single- Ccell RNA Sequencing Data Analysis by Conditional Cell-specific Network

cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

cartographs_app

A webbased visualization framework for networks.

cespgrn

CeSpGRN: Inferring cell specific GRN using single-cell gene expression data

chatgpt_academic

科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

classification-of-data-with-random-forests-and-decision-trees

Random Forest Classification of data based on entropy

classifier_v1.0-master-

classifyte

clustering-in-python

Clustering methods in Machine Learning includes both theory and python code of each algorithm. Algorithms include K Mean, K Mode, Hierarchical, DB Scan and Gaussian Mixture Model GMM. Interview questions on clustering are also added in the end.

comhapdet-repo

consensuswgcna

Consensus WGCNA and post-analysis between Downs syndrome microarray data in from GSE59630, Alzheimer's RNA seq data from Mayo Clinic, and Alzheimer's microarray data from Zhang lab.

covid19

crinet

Competing endogenous RNA (ceRNA) network inference tool

csn

Cell-specific Network Constructed by Single-cell RNA Sequencing Data