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Vince Carey's Projects

bcds icon bcds

Prototypical work towards interfacing Bioconductor and Dockstore

bceqtl icon bceqtl

eQTL analysis of breast cancer, data and code underlying the PLoS One paper http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0170181

benchmark icon benchmark

Compares the acquisition of genotypes via VariantAnnotation readVcf vs the GoogleGenomics approach.

benchoom icon benchoom

benchmarking out-of-memory strategies for R

bioc2ebi icon bioc2ebi

tools for shipping bioconductor archives to EBI Biostudies

bioc2mlr icon bioc2mlr

Utility functions to transform Bioconductor's S4 omic classes into mlr's task and CPOs

bioc4dn icon bioc4dn

Illustrative data and analyses from the NIH Common Fund 4D Nucleome resource

biocaiml icon biocaiml

AI/ML applications in genomics with Bioconductor

biocalphamis icon biocalphamis

Elementary interfaces to AlphaMissense resources, using BiocFileCache, Rsamtools, GenomicRanges

biocalphamissense icon biocalphamissense

Elementary interfaces to AlphaMissense resources, using BiocFileCache, Rsamtools, GenomicRanges

biocanviltk icon biocanviltk

Some tools for working with AnVIL data using Bioconductor concepts

biocarrayproc icon biocarrayproc

vehicle for summarizing developments on scalable array processing

biocbuildtools icon biocbuildtools

R code for managing and analyzing components of Bioconductor software ecosystem

biocbuildtoolsprev icon biocbuildtoolsprev

This repository includes resources for illustrating many aspects of software ecosystem design and maintenance relevant to the Bioconductor project.

bioccdnm icon bioccdnm

A short course on Bioconductor for Genomic Data Science at Channing Division of Network Medicine

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