veupathdb Goto Github PK

ansible-tomcat_instance

Ansible roles for EuPathDB

apicommondata

apicommonmetadatarepository

Git mirror of the ApiCommonMetadataRepository svn project. Commits here will be lost.

apicommonmodel

apicommonwebservice

apicommonwebsite

apicommonworkflow

apidbschema

SQL and scripts to install the ApiDB schema

apollo

apollo-base

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

apollo_email_report

apollo_utils

utility scripts for interacting with Apollo

base-pom

Provides base project dependencies and build setup for VEuPathDB WDK-based website projects

blast-similarity-nextflow

Nextflow workflow for blastSimilarity

blat-nextflow

Nextflow Conversion of GenomeAlignWithGfClientTask

bowtie-mapping-nextflow

Nextflow conversion of BowtieMappingTask

bulk-rnaseq-nextflow

RNA-Seq Workflow

cattoy

SQLite frontend to website log files

cbil

cellxgene

An interactive explorer for single-cell transcriptomics data

checkforupdate-nextflow

Workflow for determining which proteomes have changed since last run

clinepidata

clinepimodel

clinepiwebsite

clinepiworkflow

conifer

Configuration management tool for VEuPathDB GUS-based websites

coreui

Core UI for VeuPathDB applications. Provides components, style definitions, and utilities to enable developers to rapidly assemble complex applications with consistent UI and UX across our portfolio of sites.

corral-nextflow

dataset-handler-biom

dataset-handler-gene-list

Dataset import handler for gene list format created from example-dataset-import-handler template