Related Issues (20)
- BUG: download_fastq report error HOT 4
- BUG: [config.yaml error] HOT 15
- Combining STAR and Salmon HOT 5
- STAR 2-pass alignment HOT 1
- Q: [Comparative RNA-Seq analysis] HOT 2
- Q: [DEG analysis contrast] HOT 1
- FR: [DEG by Salmon]
- BUG: Authentication plugin 'mysql_native_password' cannot be loaded HOT 4
- FR: single cell auto detection if droplet or cell based barcodes?
- BUG: qc_scRNA rules dont use params, so rerunning doesn't work
- FR: single cell RNA filtering
- Issue with Chip-seq pipeline: jobid: 27: one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode! HOT 8
- Q: Stuck with initialisation of a workflow (atac-seq) HOT 13
- BUG: Problem with the Initiation HOT 6
- FR: Use temporary directories for sra and temporary fastq files HOT 14
- BUG: Incorrect SRA files (RNA-seq) HOT 1
- BUG: [scATAC-seq successful run but bam file and snap object are missing cell barcodes] HOT 6
- FR: don't crash when no differential genes are found HOT 4
- BUG: latest numpy version and IDR inconsistency HOT 1
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