>>> from pyebsdindex import ebsd_index, pcopt
---------------------------------------------------------------------------
TypingError Traceback (most recent call last)
Cell In[4], line 1
----> 1 from pyebsdindex import pcopt, ebsd_index
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/pyebsdindex/ebsd_index.py:26
23 """Setup and handling of Hough indexing runs of EBSD patterns."""
25 from pyebsdindex import _ray_installed
---> 26 from pyebsdindex._ebsd_index_single import EBSDIndexer, index_pats
28 if _ray_installed:
29 from pyebsdindex._ebsd_index_parallel import index_pats_distributed, IndexerRay
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/pyebsdindex/_ebsd_index_single.py:32
29 import numpy as np
30 import h5py
---> 32 from pyebsdindex import (
33 band_vote,
34 ebsd_pattern,
35 rotlib,
36 tripletlib,
37 _pyopencl_installed,
38 )
40 if _pyopencl_installed:
41 from pyebsdindex.opencl import band_detect_cl as band_detect
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/pyebsdindex/band_vote.py:32
29 import numba
30 import numpy as np
---> 32 from pyebsdindex import rotlib
35 RADEG = 180.0/np.pi
37 tempdir = PurePath("/tmp" if platform.system() == "Darwin" else tempfile.gettempdir())
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/pyebsdindex/rotlib.py:1346
1341 xyzba[2] = sXYZ[0]
1342 return xyzba
1345 @numba.jit(['f8[:](f8[:])','f8[:](f4[:])'], nopython=True,fastmath=nbFastmath, cache=nbcache)
-> 1346 def lambert3DBallToCube(xyz):
1347 LPR1 = np.float(1.33067003949147) # (3pi/4)**(1/3)
1348 LPpref = np.float(1.38197659788534) # sqrt(6/pi)
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/decorators.py:241, in _jit.<locals>.wrapper(func)
239 with typeinfer.register_dispatcher(disp):
240 for sig in sigs:
--> 241 disp.compile(sig)
242 disp.disable_compile()
243 return disp
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/dispatcher.py:965, in Dispatcher.compile(self, sig)
963 with ev.trigger_event("numba:compile", data=ev_details):
964 try:
--> 965 cres = self._compiler.compile(args, return_type)
966 except errors.ForceLiteralArg as e:
967 def folded(args, kws):
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/dispatcher.py:129, in _FunctionCompiler.compile(self, args, return_type)
127 return retval
128 else:
--> 129 raise retval
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/dispatcher.py:139, in _FunctionCompiler._compile_cached(self, args, return_type)
136 pass
138 try:
--> 139 retval = self._compile_core(args, return_type)
140 except errors.TypingError as e:
141 self._failed_cache[key] = e
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/dispatcher.py:152, in _FunctionCompiler._compile_core(self, args, return_type)
149 flags = self._customize_flags(flags)
151 impl = self._get_implementation(args, {})
--> 152 cres = compiler.compile_extra(self.targetdescr.typing_context,
153 self.targetdescr.target_context,
154 impl,
155 args=args, return_type=return_type,
156 flags=flags, locals=self.locals,
157 pipeline_class=self.pipeline_class)
158 # Check typing error if object mode is used
159 if cres.typing_error is not None and not flags.enable_pyobject:
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler.py:742, in compile_extra(typingctx, targetctx, func, args, return_type, flags, locals, library, pipeline_class)
718 """Compiler entry point
719
720 Parameter
(...)
738 compiler pipeline
739 """
740 pipeline = pipeline_class(typingctx, targetctx, library,
741 args, return_type, flags, locals)
--> 742 return pipeline.compile_extra(func)
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler.py:460, in CompilerBase.compile_extra(self, func)
458 self.state.lifted = ()
459 self.state.lifted_from = None
--> 460 return self._compile_bytecode()
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler.py:528, in CompilerBase._compile_bytecode(self)
524 """
525 Populate and run pipeline for bytecode input
526 """
527 assert self.state.func_ir is None
--> 528 return self._compile_core()
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler.py:507, in CompilerBase._compile_core(self)
505 self.state.status.fail_reason = e
506 if is_final_pipeline:
--> 507 raise e
508 else:
509 raise CompilerError("All available pipelines exhausted")
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler.py:494, in CompilerBase._compile_core(self)
492 res = None
493 try:
--> 494 pm.run(self.state)
495 if self.state.cr is not None:
496 break
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler_machinery.py:368, in PassManager.run(self, state)
365 msg = "Failed in %s mode pipeline (step: %s)" % \
366 (self.pipeline_name, pass_desc)
367 patched_exception = self._patch_error(msg, e)
--> 368 raise patched_exception
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler_machinery.py:356, in PassManager.run(self, state)
354 pass_inst = _pass_registry.get(pss).pass_inst
355 if isinstance(pass_inst, CompilerPass):
--> 356 self._runPass(idx, pass_inst, state)
357 else:
358 raise BaseException("Legacy pass in use")
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler_lock.py:35, in _CompilerLock.__call__.<locals>._acquire_compile_lock(*args, **kwargs)
32 @functools.wraps(func)
33 def _acquire_compile_lock(*args, **kwargs):
34 with self:
---> 35 return func(*args, **kwargs)
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler_machinery.py:311, in PassManager._runPass(self, index, pss, internal_state)
309 mutated |= check(pss.run_initialization, internal_state)
310 with SimpleTimer() as pass_time:
--> 311 mutated |= check(pss.run_pass, internal_state)
312 with SimpleTimer() as finalize_time:
313 mutated |= check(pss.run_finalizer, internal_state)
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/compiler_machinery.py:273, in PassManager._runPass.<locals>.check(func, compiler_state)
272 def check(func, compiler_state):
--> 273 mangled = func(compiler_state)
274 if mangled not in (True, False):
275 msg = ("CompilerPass implementations should return True/False. "
276 "CompilerPass with name '%s' did not.")
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/typed_passes.py:110, in BaseTypeInference.run_pass(self, state)
104 """
105 Type inference and legalization
106 """
107 with fallback_context(state, 'Function "%s" failed type inference'
108 % (state.func_id.func_name,)):
109 # Type inference
--> 110 typemap, return_type, calltypes, errs = type_inference_stage(
111 state.typingctx,
112 state.targetctx,
113 state.func_ir,
114 state.args,
115 state.return_type,
116 state.locals,
117 raise_errors=self._raise_errors)
118 state.typemap = typemap
119 # save errors in case of partial typing
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/typed_passes.py:88, in type_inference_stage(typingctx, targetctx, interp, args, return_type, locals, raise_errors)
86 infer.build_constraint()
87 # return errors in case of partial typing
---> 88 errs = infer.propagate(raise_errors=raise_errors)
89 typemap, restype, calltypes = infer.unify(raise_errors=raise_errors)
91 # Output all Numba warnings
File ~/miniconda3/envs/kp-dev/lib/python3.10/site-packages/numba/core/typeinfer.py:1086, in TypeInferer.propagate(self, raise_errors)
1083 force_lit_args = [e for e in errors
1084 if isinstance(e, ForceLiteralArg)]
1085 if not force_lit_args:
-> 1086 raise errors[0]
1087 else:
1088 raise reduce(operator.or_, force_lit_args)
TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Internal error at resolving type of attribute "float" of "$2load_global.0".
module 'numpy' has no attribute 'float'.
`np.float` was a deprecated alias for the builtin `float`. To avoid this error in existing code, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
During: typing of get attribute at /home/hakon/miniconda3/envs/kp-dev/lib/python3.10/site-packages/pyebsdindex/rotlib.py (1347)
Enable logging at debug level for details.
File "../../../../miniconda3/envs/kp-dev/lib/python3.10/site-packages/pyebsdindex/rotlib.py", line 1347:
def lambert3DBallToCube(xyz):
LPR1 = np.float(1.33067003949147) # (3pi/4)**(1/3)
^
Can fix this after next week, as I have a conference the coming week.