Comments (10)
torognes
commented on June 23, 2024
Added info about support to README.md
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torognes
commented on June 23, 2024
Now reads AIRR compliant TSV input files.
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torognes
commented on June 23, 2024
Added small example / test set and automated check (run Make test).
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torognes
commented on June 23, 2024
Dockerfile added in commit 4efd2c1.
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torognes
commented on June 23, 2024
Made the repository public with version 1.0.0, commit 1fe38fc.
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torognes
commented on June 23, 2024
Should be compliant now. Perhaps we should submit it to the AIRR Software WG requesting ratification against the standard. And have a Certificate of compliance?
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torognes
commented on June 23, 2024
A request was sent on 7 June 2021.
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torognes
commented on June 23, 2024
A decision is expected in September.
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torognes
commented on June 23, 2024
Ratified on 15 September 2021.
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torognes
commented on June 23, 2024
Badge added some days ago.
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Related Issues (20)
- Timestamps at major steps in the analysis HOT 1
- Option to selected alternative ways to compute output values HOT 3
- Max 65535 repertoires HOT 1
- Option to compare a set of sequences against a repertoire HOT 3
- Handle non-standard sequence symbols better HOT 2
- Segmentation fault when clustering sequences HOT 5
- Is sequence matching exact? HOT 3
- Overlap metrics HOT 3
- Segfault with very short sequences with d=3 HOT 1
- Allow d>3 HOT 1
- Unable to upgrade version HOT 3
- compairr MH index strange results HOT 10
- Detect duplicates in the input HOT 2
- Compute table of hamming distances between all sequences HOT 1
- Extracting information on the distance HOT 2
- Increase resolution of timing of operations HOT 2
- New feature: Copy additional columns from input to output files HOT 2
- Default repertoire ID if column missing HOT 1
- A flag to switch to cdr3 instead of junction HOT 1
- Allow multiple indels or more substitutions with a single indel HOT 1
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