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naimmahi avatar naimmahi commented on May 30, 2024 1

Hello @kvittingseerup,
Thanks for your concern.
Previously we didn't discard the row numbers from the data file and the sample names were in the form of SRR_GSM ids for the transcript level counts. But, we have changed it for both row names and GSM ids as well. The metadata, gene level counts, and transcript level counts should be matched now.
Thanks.

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naimmahi avatar naimmahi commented on May 30, 2024 1

It should be good now.

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kvittingseerup avatar kvittingseerup commented on May 30, 2024

I think an additional problem have been created as I can easily download count data - but when I try to download the transcript data it is not the right file name I get to download - and nothing is downloaded I just get a "Failed - server problem"

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naimmahi avatar naimmahi commented on May 30, 2024

For which data set you're having this problem?

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kvittingseerup avatar kvittingseerup commented on May 30, 2024

GSE77538

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kvittingseerup avatar kvittingseerup commented on May 30, 2024

Thanks for the fast fix - everything seems to be working now :-)

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