Gene number different from different dataset about grein HOT 2 CLOSED

Yes, you can combine the results. The differences come from two versions of mappings between the Ensembl transcript ids and Entrez gene ids. Underlying processing pipeline for transcript quantification is identical for all datasets, and data for the overlapping genes would be the same regardless of which annotation is used.
Mario

from grein.

Yes, you can combine the results. The differences come from two versions of mappings between the Ensembl transcript ids and Entrez gene ids. Underlying processing pipeline for transcript quantification is identical for all datasets, and data for the overlapping genes would be the same regardless of which annotation is used.
Mario

Yes, Thank you so much for your response Mario-Medvedovic,
I have one more question about combination results, as I know a combination of the different dataset will get the batch effect. I want to ask how to avoid the batch effect when combining result from GREIN? actually, I want to combine gene count or normalized count results.
Thank you

from grein.