tulilaulu / geovision Goto Github PK

All arrows will be drawn black if bitscores are same. Query for FR123406 with 5 
hits should reproduce the bug.

Various steps in initial-import cause

"psql: could not translate host name "-p" to address: Name or service not known"

Importing blast: 
/home/group/urenzyme/geoviz/blast/results/OLKR49.silva-ssu.align
Traceback (most recent call last):
  File "./inc/../../src/geovision//text_to_db/blast_parser.py", line 39, in <module>
    create_blast(db_name, sample_name, filename)
  File "./inc/../../src/geovision//text_to_db/blast_parser.py", line 19, in create_blast
    inserter.save(dict_from_kwargs(read_id=read_id, database_name=db_name, sample=sample_name, db_entry_id=db_seq_id, bitscore=bitscore, error_value=error_value))
  File "/home/epitkane/programming/geovision/src/geovision/text_to_db/bulk_inserter.py", line 91, in save
    modelobj.save()
AttributeError: 'dict' object has no attribute 'save'

Chrome occasionally draws arrows in the wrong direction.

To reproduce:
1. Query with default parameters to FR123406

One arrow is to the wrong direction.