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System for synthesizing Java API idioms, powered by Neural Sketch Learning

Home Page: http://www.askbayou.com

License: Apache License 2.0

Python 25.13% Shell 1.51% Java 73.31% Dockerfile 0.05%

java machine-learning synthesis

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bayou's Issues

Automate via AcceptyPy as much as https://github.com/capergroup/bayou/wiki/Bayou-Binary-1.0.x-Release-Criteria as possible.

Fleshing out /// notation

In our current Evidence api call notation examples we show the user that:

{ 
    Evidence.apicalls("getInputStream");
    Evidence.types("BluetoothSocket");
}

Denotes something akin to"call getInputStream() on an instance of BluetoothSocket"

As such, when thinking about a corresponding /// notation do we want something verbatim like:

/// calls:getInputStream types:BluetoothSocket

Or something that is more reflective of the intended structure like:

/// BluetoothSocket.getInputStream()

Provide some workflow where at least one "good" ast can be returned in less than 2.0 second for all canned inputs.

Modify start_bayou.sh so it can be run from any directory.

Move model files off of GitHub

They are getting too big for GH's limit.

How are the files in /src/test/resources/driver/ used?

tests/binary_release_files.test references wrong path for out/

Let /tool_files/build_scripts/build.sh rely on /tool_files/build_scripts/build.sh for compilation

Add keyword based acceptance test.

KeyError: 'num_layers'

After updating to model52 and trying to launch on master (afdb864) I get the following error.

$ ./start_bayou.sh
/build_scripts/out$ 2017-10-19 18:13:57.573:INFO::main: Logging initialized @12205ms to org.eclipse.jetty.util.log.StdErrLog
2017-10-19 18:13:58.237:INFO:oejs.Server:main: jetty-9.4.z-SNAPSHOT
2017-10-19 18:13:58.671:INFO:oejs.AbstractConnector:main: Started ServerConnector@75c072cb{HTTP/1.1,[http/1.1]}{0.0.0.0:8080}
2017-10-19 18:13:58.672:INFO:oejs.Server:main: Started @13305ms
2017-10-19 18:14:17.958477: W tensorflow/core/platform/cpu_feature_guard.cc:45] The TensorFlow library wasn't compiled to use SSE4.1 instructions, but these are available on your machine and could speed up CPU computations.
2017-10-19 18:14:17.958537: W tensorflow/core/platform/cpu_feature_guard.cc:45] The TensorFlow library wasn't compiled to use SSE4.2 instructions, but these are available on your machine and could speed up CPU computations.
2017-10-19 18:14:17.958555: W tensorflow/core/platform/cpu_feature_guard.cc:45] The TensorFlow library wasn't compiled to use AVX instructions, but these are available on your machine and could speed up CPU computations.
===================================
    Loading Model. Please Wait.    
===================================
Traceback (most recent call last):
  File "/home/barnett/workDev/bayou/repos/github/capergroup/bayou/master/tool_files/build_scripts/out/python/bayou/server/ast_server.py", line 176, in <module>
    bp = BayesianPredictor(args.save_dir, sess)  # create a predictor that can generates ASTs from evidence
  File "/home/barnett/workDev/bayou/repos/github/capergroup/bayou/master/tool_files/build_scripts/out/python/bayou/experiments/low_level_evidences/infer.py", line 39, in __init__
    config = read_config(json.load(f), chars_vocab=True)
  File "/home/barnett/workDev/bayou/repos/github/capergroup/bayou/master/tool_files/build_scripts/out/python/bayou/experiments/low_level_evidences/utils.py", line 59, in read_config
    config.evidence = bayou.experiments.low_level_evidences.evidence.Evidence.read_config(js['evidence'], chars_vocab)
  File "/home/barnett/workDev/bayou/repos/github/capergroup/bayou/master/tool_files/build_scripts/out/python/bayou/experiments/low_level_evidences/evidence.py", line 51, in read_config
    e.init_config(evidence, chars_vocab)
  File "/home/barnett/workDev/bayou/repos/github/capergroup/bayou/master/tool_files/build_scripts/out/python/bayou/experiments/low_level_evidences/evidence.py", line 30, in init_config
    self.__setattr__(attr, evidence[attr])
KeyError: 'num_layers'

Example inputs missing explanatory comments

1.0.0 RCO

Provide way to shut down Bayou without having to kill process or ctrl+c.

This will help with clean AAT.

License text

In the release, each source file needs to be annotated with the boilerplate notice for the license. This is not the case at this time.

https://www.apache.org/licenses/LICENSE-2.0

f737bec3a47f0c337070e9887bb7df55cbcc866c (master) does not compile.

src/main/java/edu/rice/cs/caper/bayou/core/synthesizer/Visitor.java
Error:(82, 19) java: method apply in class edu.rice.cs.caper.bayou.core.synthesizer.DCEOptimizor cannot be applied to given types;
  required: org.eclipse.jdt.core.dom.Block
  found: org.eclipse.jdt.core.dom.Block,edu.rice.cs.caper.bayou.core.dsl.DSubTree
  reason: actual and formal argument lists differ in length

empy program shown as final result

1.0.0 RC0

Make TestIO1.java the default example

1.0.0 RC0

Why must evidence be specified within a seprate block?

What is our motivation for this constraint?

Create install deps script for run_tests.sh

This may be the very first script we want to run in a clean env. Make it easy to have the deps installed like other scripts.

Investiage makeing edu.rice.pliny.library.bayou.pl.synthesizer.Synthesizer.classLoader non-static

Motivation:

The method that sets the field may be called by two different threads via two different instances concurrently.

./synthesize.sh example_inputs/TestIO.java produces exception

java.lang.IllegalArgumentException: Invalid identifier : >StackTraceElement[]<
        at org.eclipse.jdt.core.dom.SimpleName.setIdentifier(SimpleName.java:199) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.AST.newSimpleName(AST.java:2202) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.bayou.core.synthesizer.Visitor.postprocessLocal(Visitor.java:146) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.bayou.core.synthesizer.Visitor.visit(Visitor.java:96) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.MethodInvocation.accept0(MethodInvocation.java:231) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.accept(ASTNode.java:2711) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.acceptChild(ASTNode.java:2759) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ExpressionStatement.accept0(ExpressionStatement.java:145) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.accept(ASTNode.java:2711) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.acceptChildren(ASTNode.java:2782) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.Block.accept0(Block.java:137) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.accept(ASTNode.java:2711) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.acceptChildren(ASTNode.java:2782) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.Block.accept0(Block.java:137) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.accept(ASTNode.java:2711) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.acceptChild(ASTNode.java:2759) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.MethodDeclaration.accept0(MethodDeclaration.java:635) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.accept(ASTNode.java:2711) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.acceptChildren(ASTNode.java:2782) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.TypeDeclaration.accept0(TypeDeclaration.java:470) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.accept(ASTNode.java:2711) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.acceptChildren(ASTNode.java:2782) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.CompilationUnit.accept0(CompilationUnit.java:212) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jdt.core.dom.ASTNode.accept(ASTNode.java:2711) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.bayou.core.synthesizer.Synthesizer.execute(Synthesizer.java:62) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.bayou.application.api_synthesis_server.ApiSynthesisStrategyRemoteTensorFlowAsts.synthesiseHelp(ApiSynthesisStrategyRemoteTensorFlowAsts.java:205) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.bayou.application.api_synthesis_server.ApiSynthesisStrategyRemoteTensorFlowAsts.synthesise(ApiSynthesisStrategyRemoteTensorFlowAsts.java:139) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.bayou.application.api_synthesis_server.ApiSynthesisServlet.doPostHelp(ApiSynthesisServlet.java:227) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.bayou.application.api_synthesis_server.ApiSynthesisServlet.doPost(ApiSynthesisServlet.java:93) ~[bayou-1.1.0.jar:?]
        at edu.rice.cs.caper.servlet.SizeConstrainedPostBodyServlet.doPost(SizeConstrainedPostBodyServlet.java:176) ~[bayou-1.1.0.jar:?]
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:707) ~[bayou-1.1.0.jar:?]
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:841) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:535) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:170) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.server.Server.handle(Server.java:564) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:317) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:251) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:110) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.util.thread.Invocable.invokePreferred(Invocable.java:128) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.util.thread.Invocable$InvocableExecutor.invoke(Invocable.java:222) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:294) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:126) ~[bayou-1.1.0.jar:?]
        at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:672) [bayou-1.1.0.jar:?]
        at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:590) [bayou-1.1.0.jar:?]
        at java.lang.Thread.run(Thread.java:748) [?:1.8.0_131]```

Rebuild Evidence.class resource on every build

Create an alternative codebase that uses model model-LDA-KW.tar.gz

Unify all OS specific shell scripts into single scripts via uname.

README.md out of date

https://github.com/capergroup/bayou/blob/feeb7373f51d45583493319359114a683cab35b6/README.md

1.0.0 RC0

Add command line parameter to limit the number of programs generated.

Change python server protocol to http

It's getting annoying hand crafting the requests for direct performance profiling of the ast_server.

Provide some workflow where at least one "good" ast can be returned in less than 1.0 second for all canned inputs.

Intermittent NullPointerException when synthesizing TestCamera.java

Change input syntax to allow evidence declaration through a comment

Allow declaration of evidences through comments such as the following.
/// readline bufferedreader
/// call:readline type:bufferedreader

These comments should be translated to calls to methods in the class Evidence before the synthesizer is invoked.

Such a comment should also lead to the automatic import of the edu.rice.cs.caper.bayou.annotations.Evidence class, so that the package does not have to be explicitly imported in the draft.

Advance version number in master.

Advance to 1.1.0 in anticipation of next release.

Why is it unneeded to install Java via brew unlike Python?

https://github.com/capergroup/bayou/blob/88a94b149168bf3fdf41d255113d386a1772905a/src/main/bash/binary_release/install_dependencies_mac.sh

I see no reference to installing Java. Does that ship with OS X?

Inconsistency in type names

This is not necessarily a bug, but in some cases, types in synthesized programs come with full package names, and sometimes they do not. On input

import edu.rice.cs.caper.bayou.annotations.Evidence;
public class TestIO {
/* Read from a file */
void read(String file) {
{
/// calls:readLine
}
}
}

we get

import edu.rice.cs.caper.bayou.annotations.Evidence;
import java.io.FileNotFoundException;
import java.io.FileReader;
import java.io.File;
import java.net.URI;
import java.io.IOException;
import java.io.BufferedReader;

public class TestIO {
/* Read from a file */
void read(String file) {
{
String s;
BufferedReader br;
FileReader fr;
try {
fr = new java.io.FileReader((f = new File(new URI(file))));
br = new java.io.BufferedReader(fr);
while ((s = br.readLine()) != null) {
}
br.close();
} catch (FileNotFoundException _e) {
} catch (IOException _e) {
}
}
}
}

Sometimes it is "FileReader", sometimes it is "java.io.FileReader". Probably it would be more natural to just have "FileReader" in both cases.

Fleshing out /// notation

In our current Evidence api call notation examples we show the user that:

{ 
    Evidence.apicalls("getInputStream");
    Evidence.types("BluetoothSocket");
}

Denotes something akin to"call getInputStream() on an instance of BluetoothSocket"

As such, when thinking about a corresponding /// notation do we want something verbatim like:

/// calls:getInputStream types:BluetoothSocket

Or something that is more reflective of the intended structure like:

/// BluetoothSocket.getInputStream()

Create a small python script that will allow us to profile _generate_asts(...)

Swap out canned examples

Swap out canned examples so as to use the /// syntax.

Most users would likely only care about Java, as opposed to Android. It is fine to get rid of all or most of the Android examples, and just have a couple of Java examples.

move model to model-epoch49

Keywords evidence does not work

As of now, the keywords evidence is not working on beta.askbayou. The following query yields no result.

import edu.rice.cs.caper.bayou.annotations.Evidence;

public class TestIO {
void read(String file) {
{
/// read a line
}
}

}

Result code may include use of uninitialized variables.

In 1.0.0 RC0, for example, variable i in the else body of:

Input:

import edu.rice.cs.caper.bayou.annotations.Evidence;
import android.bluetooth.BluetoothAdapter;

public class TestBluetooth {

    void readFromBluetooth(BluetoothAdapter adapter) {
        String address = "00:43:A8:23:10:F0";
        {
            Evidence.apicalls("getInputStream");
            Evidence.types("BluetoothSocket");
        }
    }

}

Output:

import edu.rice.cs.caper.bayou.annotations.Evidence;
import android.bluetooth.BluetoothAdapter;
import android.util.AttributeSet;
import android.content.Context;
import android.widget.PopupWindow;

public class TestBluetooth {

    void readFromBluetooth(BluetoothAdapter adapter) {
        String address = "00:43:A8:23:10:F0";
        {
			PopupWindow pw1;
			PopupWindow pw;
			int i;
			AttributeSet as;
			Context c;
			boolean b;
			if ((b = adapter.cancelDiscovery())) {
				pw = new PopupWindow(c, (as = c.getResources().getAnimation(adapter.getState())),
						(i = adapter.getScanMode()));
			} else {
				pw1 = new PopupWindow(c, as, i, i);
			}
			pw.setInputMethodMode(i);
		}
    }

}

askbayou.com does not link to info.askbayou.com

1.0.0 RC0

LLE CONFIG_INFER issue

In lle, evidence.py, we currently have

CONFIG_INFER = ['chars', 'vocab', 'vocab_size']

def init_config(self, evidence, chars_vocab):
    for attr in CONFIG_ENCODER + (CONFIG_INFER if chars_vocab else []):
        self.__setattr__(attr, evidence[attr])

def dump_config(self):
    js = {attr: self.__getattribute__(attr) for attr in CONFIG_ENCODER + CONFIG_INFER}
    return js

This does not make sense since are all inside the decoder, right? And, evidence does not have those attributes. Or, in lle, evidences are supposed to have the vocabulary since it uses a bag-of-words representation?
My config.json is this one /home/vm17/Work/bayou/trained/s3/model-10/model-10.49.tar.gz.

leading newline in some results

1.0.0 RC0

running tool_files/build_scripts/install_dependencies.sh on Mac doesn't work

Displays

[Darwin: command not found

Bad error message for draft with multiple holes

Here is some code I entered in Askbayou:

import edu.rice.cs.caper.bayou.annotations.Evidence;

public class TestIO1 {
    void read(String file) {
        Evidence.apicalls("readLine");
    }     
    void foo(String file) {
        Evidence.apicalls("readLine");
    }  
}

This leads to the message "Unexpected error. Please retry."

In general, Bayou should allow multiple holes in the draft. This could be a reasonable goal for version 1.2.0. However, at the very Instead, Bayou should return a message that clarifies that we currently only allow one hole in the code at one time, and Askbayou should deliver this message.

/tool_files/time/ scripts outdated

Don't reflect the current socket message formats.

Allow Python to log in parallel to two different user specified directories.

This is in support of AskBayou.

Multiple function/evidence crashes synthesize.sh

The following input to synthesize.sh

import edu.rice.cs.caper.bayou.annotations.Evidence;

public class TestIO1 {
    void read(String file) {
        Evidence.apicalls("readLine");
    }     
    void foo(String file) {
        Evidence.apicalls("readLine");
    }   
}

Produces the following output:

$ ./synthesize.sh test.java 
Exception in thread "main" java.io.IOException: Unexpected status code: 500
at edu.rice.cs.caper.bayou.core.bayou_services_client.ap_synthesis.ApiSynthesisClient.synthesizeHelp(ApiSynthesisClient.java:129)
at edu.rice.cs.caper.bayou.core.bayou_services_client.ap_synthesis.ApiSynthesisClient.synthesise(ApiSynthesisClient.java:78)
at edu.rice.cs.caper.bayou.application.api_synthesis_server.ApiSynthesisLocalClient.synthesise(ApiSynthesisLocalClient.java:54)
at edu.rice.cs.caper.bayou.application.api_synthesis_server.ApiSynthesisLocalClient.main(ApiSynthesisLocalClient.java:95)

on commit f29f888

Incorrect handling of mixes of evidence declarations and normal statements.

Here is some code I entered:

import edu.rice.cs.caper.bayou.annotations.Evidence;

public class TestIO1 {

    // Read from a file
    void read(String file) {
        Evidence.apicalls("readLine");
        System.out.println("moo moo.");
    }   
}

In the output, the System.out.println statement got eaten. That is, Bayou returned programs like:

import edu.rice.cs.caper.bayou.annotations.Evidence;
import java.io.IOException;
import java.io.BufferedReader;
import java.io.InputStreamReader;
import java.io.InputStream;

public class TestIO1 {
    // Read from a file
    void read(String file) {
		String s;
		BufferedReader br;
		InputStreamReader isr;
		InputStream is;
		try {
			isr = new InputStreamReader((is = file.getClass().getResourceAsStream(file)));
			br = new BufferedReader(isr);
			while ((s = br.readLine()) != null) {
			}
		} catch (IOException _e) {
		}
	}   
}

In fact, the same thing happens when we change one of the demo examples slightly:

import edu.rice.cs.caper.bayou.annotations.Evidence;
import android.bluetooth.BluetoothAdapter;

public class TestBluetooth {
    /* Get an input stream that can be used to read from
     * the given blueooth hardware address */
    void readFromBluetooth(BluetoothAdapter adapter) {
        String address = "00:43:A8:23:10:F0";
        Evidence.apicalls("getInputStream");
        Evidence.types("BluetoothSocket");
    }   

}

All I have done here is removed the braces from the evidence declarations. This erases the definition of "address". We get:

import edu.rice.cs.caper.bayou.annotations.Evidence;
import android.bluetooth.BluetoothAdapter;
import java.io.IOException;
import java.util.UUID;
import android.bluetooth.BluetoothSocket;
import java.io.OutputStream;
import java.io.InputStream;

public class TestBluetooth {

    /* Get an input stream that can be used to read from
     * the given blueooth hardware address */
    void readFromBluetooth(BluetoothAdapter adapter) {
		OutputStream os;
		InputStream is;
		BluetoothSocket bs;
		try {
			is = (bs = adapter.getRemoteDevice(address).createInsecureRfcommSocketToServiceRecord(UUID.randomUUID()))
					.getInputStream();
			os = bs.getOutputStream();
		} catch (IOException _e) {
		}
	}   
}

flask not installed via install deps script

Logical errors in output programs

On the query:

import java.util.*;
public class TestStack {
void foo(Stack s) {
/// calls:pop calls:isEmpty
}
}

one of the top-3 outputs is:

import java.util.*;
public class TestStack {
void foo(Stack s) {
String s1;
boolean b;
if (b = s.isEmpty()) {
s1 = s.pop();
} else {
}
}
}

This error won't show up if we treat isEmpty and !isEmpty as distinct API calls. I think we should do so, for not just isEmpty but all API calls with boolean return values.

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