tri-amdd / materialnet Goto Github PK

Currently, this zoom mode operates globally, always expanding from (0, 0). Instead, make it work from the coordinates at the center of the current view position.

once the user created a subset of graph he/she might wanna download the data as a CSV file. Essentially the LineUp view as CSV

Allow the user to stick/pin a selection of a node. aka define a focus node

effects

• keep the local neighborhood of the pinned selection only
• allow to select/inspect other nodes

extension of #65 allowing to store the whole state (dataset, scale, sselection, ...) in the state for simpler sharing

e.g., sort first by synthesis probability, then some other value.

I did not see a link in the Readme to the documentation of this package, or instructions about how to generate this documentation locally.

https://app.crystaltoolkit.org/

atm when a node is selected all not connected edges will have a opacity of zero. An alternative is just to draw only the selected lines. Or a mix, by adding a layer showing only the selected lines

It should maybe be updated to "materialnet"

Design a system to display different data templates for different datasets.

@waxlamp can you elaborate on that?

based on #61 the info panel is now to the right. Thus, making the settings panel on the left collapsible creates more space if needed

What I did:

git clone [email protected]:ToyotaResearchInstitute/materialnet.git
cd materialnet
yarn install
yarn test
# press a to run all tests

What I got

 FAIL  src/App.test.js
  ● Test suite failed to run

    Jest encountered an unexpected token

    This usually means that you are trying to import a file which Jest cannot parse, e.g. it's not plain JavaScript.

    By default, if Jest sees a Babel config, it will use that to transform your files, ignoring "node_modules".

    Here's what you can do:
     • To have some of your "node_modules" files transformed, you can specify a custom "transformIgnorePatterns" in your config.
     • If you need a custom transformation specify a "transform" option in your config.
     • If you simply want to mock your non-JS modules (e.g. binary assets) you can stub them out with the "moduleNameMapper" config option.

    You'll find more details and examples of these config options in the docs:
    https://jestjs.io/docs/en/configuration.html

    Details:

    /local/scratch/fraux/code/tests/materialnet/node_modules/lodash-es/lodash.js:10
    export { default as add } from './add.js';
    ^^^^^^

    SyntaxError: Unexpected token 'export'

       9 | import MenuItem from '@material-ui/core/MenuItem';
      10 | import CancelIcon from '@material-ui/icons/Cancel';
    > 11 | import { deburr } from 'lodash-es';
         | ^
      12 | import { ListItemText, ListItemSecondaryAction } from '@material-ui/core';
      13 | 
      14 | // BASED on https://material-ui.com/components/autocomplete/

      at ScriptTransformer._transformAndBuildScript (node_modules/jest-runtime/build/script_transformer.js:403:17)
      at Object.<anonymous> (src/components/controls/reactselect.js:11:1)

Test Suites: 1 failed, 1 total
Tests:       0 total
Snapshots:   0 total
Time:        4.044s
Ran all test suites.

System information: Ubuntu 18.04, node 13.8.0, yarn 1.22.0.

for now, hovering of a line is disabled. Since the tooltip has changed to be a react based component, it raised the question where to the show the tooltip when hovering over a line. One option is to show it in the center or on some edge

night mode:

In the current version a simple invert filter is used to adapt the logo to the night mode. However, since we now have a colored logo, it does change the Cooperate Design of it. Doe they have a logo which red color and white text?

Allow the user to filter the graph by property ranges.

e.g. add to the side panel as a separate section

Perhaps shift+mousewheel or ctrl+mousewheel.

Please provide community guidelines for potential contributors (openjournals/joss-reviews#2105).

Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Please provide example usage in the documentation (README.md) on how to use MaterialNet (openjournals/joss-reviews#2105). For example, could you write a small markdown on how to perform a relevant analysis in this software? What information do you wish to obtain from MaterialNet?

In the deployed version, after switching the dataset away from the default, the throbber remains on the display and prevents direct mouse interaction with the data.

This will involve:

• adding prettier to the dev dependencies
• creating an NPM script to run prettier in check and fix modes
• adding husky to run prettier in check mode in a pre-commit hook

This is to help re-establish proper context if the user gets lost somehow

This allows for single letter elements to match immediately (e.g., "O" will match oxygen first, rather than cobalt)

e.g., results depend on what order elements are mentioned, parentheses, etc.

Currently, live layout only works for subspace materials.

at least I cannot see any completions

so far the node color can be assigned to different attributes. However, there is no visual indication what a specific color means. A color legend will help with that

do we need it, since everyone will probably just use the mouse anyhow?

selecting the dataset to visualize via the URL (e.g. #precise) will simplify the initial selection and speeds up the development, when using just the simple dataset

This involves unifying the "subspace" and material search functions into a single filtering operation that allows for construction of subgraphs, and then subjects them to LineUp analysis, foregrounded visualization, and live layout.

The following issues may depend on this one:

• #108
• #116

Mobx (https://mobx.js.org/) is a simple and powerful state management tool, especially when using React.

especially with sliders it becomes tedious to reset them. A central reset filter button can be helpful in this case.

Hi, I am one of the reviewer for the JOSS paper for materialnet. I'll open a few issues as I find surprising things while playing with material net.

On the live demo (https://toyotaresearchinstitute.github.io/materialnet), in the "about" modal, links points to an outdated URL for this repository: https://github.com/arclamp/materialnet/. Github redirect this to https://github.com/ToyotaResearchInstitute/materialnet/, so I guess the repository has been transferred at some point without updating the URLS.

Related to the JOSS Review (openjournals/joss-reviews#2105). When I want to run the application locally, the application gets stuck loading a network.

These are the commands I entered in order to run the application:

git clone https://github.com/ToyotaResearchInstitute/materialnet.git
cd materialnet
yarn install
yarn start

Any ideas on how I can get this to work?